View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_18 (Length: 397)
Name: NF13860_low_18
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 379
Target Start/End: Original strand, 8176065 - 8176427
Alignment:
| Q |
13 |
aatatcgctaaataactagttgctaatattatgaccaatttgtcaattttggtctataaaccgatttgtcactaaatcagttactatatcacaatctttt |
112 |
Q |
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| T |
8176065 |
aatatcgctaaataactagttgctaatattatgaccgatttgtcaattttggtctataaaccgat----cactaaatcagttactatatcacaatctttt |
8176160 |
T |
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| Q |
113 |
ttgtagttttgcaagcataatattaatgacatggaagtgctatagtatatgctacctggacaatcctgtaaagaccaggaatagacattgcatcagctcc |
212 |
Q |
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| T |
8176161 |
ttgtagttttgcaagcataatattaatgacatggaagtgctatagtatatgctacctggacaatcctgtaaagaccaggaatagacattgcatcagctcc |
8176260 |
T |
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| Q |
213 |
aagtagttttaatccaaaatcaacatgtggctgcaatcaaagaatcaaaatgagatgtgatgataatatatcatttgttcatcacaatggtggttattaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8176261 |
aagtagttttaatccaaaatcaacatgtggctgcaatcaaagaatcaaaatgagatgtgatgataatatatcatttgttcatcacaatggtggttattaa |
8176360 |
T |
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| Q |
313 |
gaaatagacatcatctataccttttccatgagagacacgtaaatattggcgaaacaaggaaaactag |
379 |
Q |
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| T |
8176361 |
gaaatagacatcatctataccttttccatgagagacacgtaaatattggcgaaacaaggaaaactag |
8176427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 18845236 - 18845283
Alignment:
| Q |
332 |
ccttttccatgagagacacgtaaatattggcgaaacaaggaaaactag |
379 |
Q |
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| T |
18845236 |
ccttttccatgagagaaacataaataatggcgaaacaaggaaaactag |
18845283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 18845161 - 18845215
Alignment:
| Q |
219 |
ttttaatccaaaatcaacatgtggctgcaatcaaagaatcaaaatgagatgtgat |
273 |
Q |
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|||||||||||||||||||||||| || || |||||||| |||| || ||||||| |
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| T |
18845161 |
ttttaatccaaaatcaacatgtggttgtaaacaaagaataaaaaagatatgtgat |
18845215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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