View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_19 (Length: 391)
Name: NF13860_low_19
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 36490012 - 36489669
Alignment:
| Q |
10 |
agaagaacgacagaagttttatgtatcaacgaaattagaaatgttgataattttcaaagttgaaggtgattggggttgtatatatttggtgtcttaaagc |
109 |
Q |
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| T |
36490012 |
agaagaacgacagaagttttatgtatcaatgaaattagaaatgttgataattttcaaagttgaaggtgattggggttgtatatatttggtgtcttaaagc |
36489913 |
T |
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| Q |
110 |
agttaagaattttatttggcgagtgtgtcgtggcgtatgcctgataagatgtgattta-gtagagcattcggaagagccgcaaccttcgcatttgggaga |
208 |
Q |
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| T |
36489912 |
agttaagaattttatttggcgagtgtgtcgtggcgtatgcctgataagatgtgatttatgtagagcattcggaagagccgcaaccttcgcatttgggaga |
36489813 |
T |
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| Q |
209 |
gccattcggagttgcaccatcagatttttatgcgtgctgtacacttaaatcagagctggaaaacagcctagatgcaggtccagcagcggcagaacagccc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36489812 |
gccattcggagttgcaccatcagatttttatgcgtgctgtacacttaaatcagagctggaaaacagcctagatgcaggtccagcagcggcagaacagccc |
36489713 |
T |
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| Q |
309 |
agtacttcttgacagaaaagtttcagttggaaaaaaccatcccc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36489712 |
agtacttcttgacagaaaagtttcagttggaaaaaaccatcccc |
36489669 |
T |
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