View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_22 (Length: 372)
Name: NF13860_low_22
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 41316191 - 41316361
Alignment:
| Q |
1 |
tcatcaaccaatgattaaccgtcaaattagtgaagagaccaaagttgatataccccttcccactccttataaggatgtccttcttggtcagactggatca |
100 |
Q |
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| T |
41316191 |
tcatcaaccaatgattaaccgtcaaattagtgaagagaccaaagttgatataccccttcccactccttataaggatgtccttcttggtcagactggatca |
41316290 |
T |
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| Q |
101 |
tgatttacggtctttgttgttattttatccatcatttctctcatttctctttgtctaatatatataaacat |
171 |
Q |
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| T |
41316291 |
tgatttacggtctttgttgttattttatcaatcatttctctcatttctctttgtctaatatatataaacat |
41316361 |
T |
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Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 167 - 357
Target Start/End: Complemental strand, 41314882 - 41314698
Alignment:
| Q |
167 |
aacataaaaataagcaaaagacattttccaatttagattgaatcctatacttggttcttactaatctttcagtgtcctaataactcatatcactagatta |
266 |
Q |
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| T |
41314882 |
aacataaaaataagcaaaagacattttccaatttagattgaatcctatacttggttcttactaatctttcagtgtcctaataactcatatcactag---- |
41314787 |
T |
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| Q |
267 |
tattacacatttgaaaactaaacataagttcgttctaaaatcaagatatgacacagtaggttcaaggttcaaacccgactactaacatttt |
357 |
Q |
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| T |
41314786 |
-attacacatttgaaaactaaacataagttcgttataaaatcaagatatgacacagtaggtt-aaggttcaaacccgactactaacatttt |
41314698 |
T |
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