View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13860_low_24 (Length: 345)
Name: NF13860_low_24
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 67 - 312
Target Start/End: Original strand, 45936853 - 45937098
Alignment:
| Q |
67 |
gatggtactaattttgttttcagggaataatttgcaccgggctttcttattgtataatttcttggaccattgagagaaaagggcctctttatgtctctgt |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936853 |
gatggtactaattttgttttcagggaataatttgcaccgggctttcttattgtataatttcttggaccattgagagaaaagggcctctttatgtctctgt |
45936952 |
T |
|
| Q |
167 |
atttacccccttgcagcttatcatcacagcttttattagctgggcttttcttcgggagaaattatatgttggaacgtaagcaatttaattgattaattag |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936953 |
atttacccccttgcagcttatcatcacagcttttattagctgggcttttcttcgggagaaattatatgttggaacgtaagcaatttaattgattaattag |
45937052 |
T |
|
| Q |
267 |
ttcataattacatataattatatttagtagtactaattatggtcta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45937053 |
ttcataattacatataattatatttagtagtactaattatggtcta |
45937098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45936753 - 45936802
Alignment:
| Q |
1 |
tcattaaatcttttattggttgatcacataatttaaatttgtacttactc |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936753 |
tcattaaatcttttattggttgatcacataatttaaatttgtacttactc |
45936802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 10562486 - 10562608
Alignment:
| Q |
119 |
tataatttcttggaccattgagagaaaagggcctctttatgtctctgtatttacccccttgcagcttatcatcacagcttttattagctgggcttttctt |
218 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
10562486 |
tataatttcatggaccattgggagaaaaggtcctctttatgtgtctgtatttactcccttgcagcttatcctcacagcttttattagctgggcttttatt |
10562585 |
T |
|
| Q |
219 |
cgggagaaattatatgttggaac |
241 |
Q |
| |
|
| |||||||||||| |||||||| |
|
|
| T |
10562586 |
caggagaaattatacgttggaac |
10562608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University