View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_28 (Length: 311)
Name: NF13860_low_28
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 18966979 - 18966704
Alignment:
| Q |
17 |
aatctgaaataagtcaatccaaacaagttctaagttcacagaaggatatgccaacaatttcacatttatgactgtgaaggtatatacata-aaaaatgta |
115 |
Q |
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| T |
18966979 |
aatctgaaataagtgaatccaaacaagttctaagttcacacaaggatatgccaacaatttcacatttctgactgtgaaggtatatacatagaaaaatgta |
18966880 |
T |
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| Q |
116 |
aaactcagttctataaattactttatatttgcttggtcttgatactatttgttaatatttatgcagcgatctggacatactgttccagaatataaaccac |
215 |
Q |
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| T |
18966879 |
atactcaattctataaattactttatattttcttggtcttgatactatttcttaatatttatgcagcgatctagacatactgttccagaatataaaccac |
18966780 |
T |
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| Q |
216 |
atgaagcgttgcacttttaccaacaatttataaatgagctgcctatataggaacgcggacataataacatcttctt |
291 |
Q |
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| T |
18966779 |
aggaagcgttgcacttttaccaacaatttataaatgagctgcctatataggaacgctgacataatgacatcttctt |
18966704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 18950590 - 18950674
Alignment:
| Q |
24 |
aataagtcaatccaaacaagttctaagttcacagaaggatatgccaacaatttcacatttatgactgtgaaggtatatacataaa |
108 |
Q |
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| T |
18950590 |
aataagtgaatccaaacaagttctaagttcacacaaggatatgccaacaatttcacatttctgactgtgaaggtatatacataaa |
18950674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 268
Target Start/End: Complemental strand, 18018705 - 18018491
Alignment:
| Q |
50 |
gttcacagaaggatatgccaacaatttcacatttatgactgtgaaggtatatacataaaaaatgtaaaactcagttctataaattactttatatttgctt |
149 |
Q |
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| T |
18018705 |
gttcacacaaggatatgccaataatttcacatttcttactgtaaaggtatatata-aaaaaatgtaatatttagttctataaattactttatatttgctt |
18018607 |
T |
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| Q |
150 |
ggtcttgatactatttgttaatatttatgcagcgatctggacatactgttccagaatataaaccacatgaagcgttgcacttttaccaacaatttataaa |
249 |
Q |
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| T |
18018606 |
ggtcttgatactatttgcta---tttatgtagggatctggacatactgttccagaatataaaccacatgaagcatttcatttttaccaacattttataaa |
18018510 |
T |
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| Q |
250 |
tgagctgcctatataggaa |
268 |
Q |
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|| | |||||||||||||| |
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| T |
18018509 |
tgggttgcctatataggaa |
18018491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 10830346 - 10830199
Alignment:
| Q |
104 |
ataaaaaatgtaaaactcagttctataaattactttatatttgcttggtcttgatactatttgttaatatttatgcagcgatctggacatactgttccag |
203 |
Q |
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||||||||||||| | | || | ||||| |||| | ||||||||||||||||||||||| || ||||||||| |||| ||| ||||||||| | ||||| |
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| T |
10830346 |
ataaaaaatgtaatatttaggtatataacttacataatatttgcttggtcttgatactaattattaatatttgtgcatggatatggacatacagctccag |
10830247 |
T |
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| Q |
204 |
aatataaaccacatgaagcgttgcacttttaccaacaatttataaatg |
251 |
Q |
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| T |
10830246 |
aatataaactataggaagcattacatttttagcaacatttcataaatg |
10830199 |
T |
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