View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_29 (Length: 292)
Name: NF13860_low_29
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 53665815 - 53666083
Alignment:
| Q |
17 |
atataccttgaaatctcatgtgactgtgaaagtgctccagttctgcctatctcgcggcgcagaggaaagactcgcagcacaaagctagaaggattgcagg |
116 |
Q |
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| T |
53665815 |
atataccttgaaatcgcatgtgactgtgaaagtgttccagttctgcctatctcgcggcgcagaggaaagactcgcagcacgaagctagaaggattgcagg |
53665914 |
T |
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| Q |
117 |
gtgtctagccact------ctcctccagagtaagtcaatttgaagcgaacagggtaaacaatattgtgtgtttttcctcttctatactcctcttttatct |
210 |
Q |
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| T |
53665915 |
gtgtctagccactgcctctctcctccagagtaagtcaatttgaagcgaacagggtaaacaatattgtgtgtttttcctcttctatactcctcttttatct |
53666014 |
T |
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| Q |
211 |
tgttgttcttctaatcaattgtagttttacattacattgttgttattgcttgcgatctatttggctatt |
279 |
Q |
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| T |
53666015 |
tgttgttcttctaatcaattgtagttttacattacattgttgttattgcttgcgatctatttggctatt |
53666083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 1714925 - 1714809
Alignment:
| Q |
156 |
cgaacagggtaaacaatattgtgtgtttttcctcttctatactcctcttttatcttgttgttcttctaatcaattgtagttttacattacattgttgtta |
255 |
Q |
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| T |
1714925 |
cgaactgggtaaacaatattgtgttttgttcgtcttctctactactcttttatcttgttgttcttcgattcaattgtggttttacgttacattgttgtta |
1714826 |
T |
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| Q |
256 |
ttgcttgcgatctattt |
272 |
Q |
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| T |
1714825 |
ttacttgcgatctattt |
1714809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 22859546 - 22859639
Alignment:
| Q |
163 |
ggtaaacaatattgtgtgtttttcctcttctatactcctcttttatcttgttgttcttctaatcaattgtagttttacattacattgttgttat |
256 |
Q |
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| T |
22859546 |
ggtaaacattattgtgtgttgatcctcttatctactactcttttatcttattgttctttgattcaattgtggttttgcattacactgttgttat |
22859639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 40873844 - 40873933
Alignment:
| Q |
190 |
ttctatactcctcttttatcttgttgttcttctaatcaattgtagttttacattacattgttgttattgcttgcgatctatttggctatt |
279 |
Q |
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| T |
40873844 |
ttctctactactcttttatcttggtgttcttctattcaattatggtcttacattacactcttattattccttgcgatctatttggttatt |
40873933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 20427127 - 20427176
Alignment:
| Q |
162 |
gggtaaacaatattgtgtgtttttcctcttctatactcctcttttatctt |
211 |
Q |
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| T |
20427127 |
gggtaaacaatattgtgtgttgttcctattctctactactcttttatctt |
20427176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 4914343 - 4914391
Alignment:
| Q |
166 |
aaacaatattgtgtgtttttcctcttctatactcctcttttatcttgtt |
214 |
Q |
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| T |
4914343 |
aaacaatattgtgtgttgttcctcttcttttatactcttttatcttgtt |
4914391 |
T |
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