View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13860_low_36 (Length: 219)

Name: NF13860_low_36
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13860_low_36
NF13860_low_36
[»] chr8 (2 HSPs)
chr8 (77-205)||(33820226-33820354)
chr8 (17-67)||(40852108-40852158)
[»] chr2 (6 HSPs)
chr2 (17-61)||(16944810-16944854)
chr2 (17-61)||(17015475-17015519)
chr2 (19-66)||(11364678-11364725)
chr2 (19-65)||(3191201-3191247)
chr2 (19-65)||(34356580-34356626)
chr2 (19-60)||(15806059-15806100)
[»] chr4 (4 HSPs)
chr4 (17-56)||(4479748-4479787)
chr4 (19-65)||(21074479-21074525)
chr4 (17-65)||(41370185-41370233)
chr4 (17-65)||(54974736-54974784)
[»] chr3 (3 HSPs)
chr3 (18-61)||(29072393-29072436)
chr3 (19-65)||(53040510-53040556)
chr3 (19-59)||(29230008-29230048)
[»] chr1 (2 HSPs)
chr1 (19-60)||(39973938-39973979)
chr1 (31-67)||(52125450-52125486)
[»] chr7 (1 HSPs)
chr7 (17-53)||(21071701-21071737)
[»] chr5 (1 HSPs)
chr5 (21-65)||(12448712-12448756)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 33820354 - 33820226
Alignment:
Q  77 ataataatttcataatttgatatactcaaagagtactcgaaa-actatcgttaaaaattaaaaaggcattgcgcgcccgaaactgataccatcggttcag 175  Q
    |||||||||||||||||||||||||||||||||||| | ||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33820354 ataataatttcataatttgatatactcaaagagtacaccaatgactat-gttaaaaattaaaaaggcattgcgcgcccgaaactgataccatcggttcag 33820256  T
Q  176 cctttccctacaccaaactggcgctctgtg 205  Q
    ||||||||||||||||||||||||||||||    
T  33820255 cctttccctacaccaaactggcgctctgtg 33820226  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 40852108 - 40852158
Alignment:
Q  17 agtttttataaaagtttgtatattcaatacattgaaaattgaaatatttta 67  Q
    ||||||||| ||| | |||||||||||| |||||||||||||||| |||||    
T  40852108 agtttttatgaaaatatgtatattcaatgcattgaaaattgaaatgtttta 40852158  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 16944854 - 16944810
Alignment:
Q  17 agtttttataaaagtttgtatattcaatacattgaaaattgaaat 61  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  16944854 agtttttataaaaatttgtgtattcaatacattgaaaattgaaat 16944810  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 17015519 - 17015475
Alignment:
Q  17 agtttttataaaagtttgtatattcaatacattgaaaattgaaat 61  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  17015519 agtttttataaaaatttgtgtattcaatacattgaaaattgaaat 17015475  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 11364725 - 11364678
Alignment:
Q  19 tttttataaaagtttgtatattcaatacattgaaaattgaaatatttt 66  Q
    ||||||||||| |||||||| |||||| ||| ||||||||||||||||    
T  11364725 tttttataaaaatttgtataatcaataaattaaaaattgaaatatttt 11364678  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 3191247 - 3191201
Alignment:
Q  19 tttttataaaagtttgtatattcaatacattgaaaattgaaatattt 65  Q
    |||||||||||||||||||| ||||| || |||||||||||| ||||    
T  3191247 tttttataaaagtttgtataatcaatgcaatgaaaattgaaaaattt 3191201  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 34356580 - 34356626
Alignment:
Q  19 tttttataaaagtttgtatattcaatacattgaaaattgaaatattt 65  Q
    |||||||||||   |||||| ||||||||||||||||||||||||||    
T  34356580 tttttataaaaacatgtataatcaatacattgaaaattgaaatattt 34356626  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 15806059 - 15806100
Alignment:
Q  19 tttttataaaagtttgtatattcaatacattgaaaattgaaa 60  Q
    ||||||||||||||||| || ||||| |||||||||||||||    
T  15806059 tttttataaaagtttgtgtaatcaatgcattgaaaattgaaa 15806100  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 4479787 - 4479748
Alignment:
Q  17 agtttttataaaagtttgtatattcaatacattgaaaatt 56  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  4479787 agtttttataaaaagttgtatattcaatacattgaaaatt 4479748  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 21074479 - 21074525
Alignment:
Q  19 tttttataaaagtttgtatattcaatacattgaaaattgaaatattt 65  Q
    |||||||||||  |||| |||||| ||||||||||||||||||||||    
T  21074479 tttttataaaaaattgtgtattcagtacattgaaaattgaaatattt 21074525  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 41370185 - 41370233
Alignment:
Q  17 agtttttataaaagtttgtatattcaatacattgaaaattgaaatattt 65  Q
    ||||||||| ||| ||||| || ||||| ||||||||||||||||||||    
T  41370185 agtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatattt 41370233  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 54974736 - 54974784
Alignment:
Q  17 agtttttataaaagtttgtatattcaatacattgaaaattgaaatattt 65  Q
    ||||||||||||| ||| |||||||||| |||||||| ||||| |||||    
T  54974736 agtttttataaaaatttatatattcaatgcattgaaagttgaagtattt 54974784  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 29072393 - 29072436
Alignment:
Q  18 gtttttataaaagtttgtatattcaatacattgaaaattgaaat 61  Q
    |||||||||||| ||| |||||||||||||||||||||| ||||    
T  29072393 gtttttataaaaatttatatattcaatacattgaaaattaaaat 29072436  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 53040556 - 53040510
Alignment:
Q  19 tttttataaaagtttgtatattcaatacattgaaaattgaaatattt 65  Q
    ||||||| ||||||||| |||||||||||||| |||||||| |||||    
T  53040556 tttttatgaaagtttgtgtattcaatacattggaaattgaagtattt 53040510  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 29230008 - 29230048
Alignment:
Q  19 tttttataaaagtttgtatattcaatacattgaaaattgaa 59  Q
    ||||||| ||| ||||||||||||||||||| |||||||||    
T  29230008 tttttattaaaatttgtatattcaatacattaaaaattgaa 29230048  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 39973979 - 39973938
Alignment:
Q  19 tttttataaaagtttgtatattcaatacattgaaaattgaaa 60  Q
    ||||||| |||||||||||| ||||| |||||||||||||||    
T  39973979 tttttatgaaagtttgtataatcaatgcattgaaaattgaaa 39973938  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 52125486 - 52125450
Alignment:
Q  31 tttgtatattcaatacattgaaaattgaaatatttta 67  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  52125486 tttgtctattcaatacattgaaaattgaattatttta 52125450  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 21071701 - 21071737
Alignment:
Q  17 agtttttataaaagtttgtatattcaatacattgaaa 53  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  21071701 agtttttgtaaaaatttgtatattcaatacattgaaa 21071737  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 12448756 - 12448712
Alignment:
Q  21 tttataaaagtttgtatattcaatacattgaaaattgaaatattt 65  Q
    ||||||||||||||| || ||| | ||||||||||||||||||||    
T  12448756 tttataaaagtttgtgtaatcattgcattgaaaattgaaatattt 12448712  T

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