View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13860_low_37 (Length: 210)

Name: NF13860_low_37
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13860_low_37
NF13860_low_37
[»] chr7 (2 HSPs)
chr7 (40-194)||(37816468-37816622)
chr7 (24-90)||(25241137-25241203)
[»] chr1 (1 HSPs)
chr1 (7-110)||(7242802-7242905)
[»] chr2 (1 HSPs)
chr2 (7-68)||(39562250-39562311)
[»] chr5 (1 HSPs)
chr5 (19-90)||(15386108-15386180)
[»] chr8 (1 HSPs)
chr8 (14-93)||(10571657-10571736)
[»] chr3 (2 HSPs)
chr3 (15-110)||(39950255-39950350)
chr3 (7-85)||(55123165-55123243)
[»] chr6 (1 HSPs)
chr6 (27-72)||(7468556-7468601)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 37816622 - 37816468
Alignment:
Q  40 ttttgtgagattcaaatgagtgacaaactctccctaaaaattttaatgttgttgtatgtccaaaactggataaccttaattaaaatagaagtgacatatg 139  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37816622 ttttgtgagattcaaatgagtgataaactctccctaagagttttaatgttgttgtatgtccaaaactagataaccttaattaaaatagaagtgacatatg 37816523  T
Q  140 taatctcatctaagtgttattgcgtaacattacactaattttgttccttccaaaa 194  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  37816522 taatctcatataagcgttattgcgtaacattacactaattttgttccttccaaaa 37816468  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 25241137 - 25241203
Alignment:
Q  24 agactaatccatcgaattttgtgagattcaaatgagtgacaaactctccctaaaaattttaatgttg 90  Q
    |||||||||  |||| | |||||||||| ||||| | |||||||||||||||||| |||||| ||||    
T  25241137 agactaatctctcgagtcttgtgagatttaaatgggcgacaaactctccctaaaagttttaaggttg 25241203  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 7242802 - 7242905
Alignment:
Q  7 tccgcgcacaactgcgaagactaatccatcgaattttgtgagattcaaatgagtgacaaactctccctaaaaattttaatgttgttgtatgtccaaaact 106  Q
    ||||||| |||||||| |||||||||| |||| | || ||||||||||||| | |  | ||||||||||| | |||||| |||| || |||||||| |||    
T  7242802 tccgcgcgcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtccaagact 7242901  T
Q  107 ggat 110  Q
    ||||    
T  7242902 ggat 7242905  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 39562311 - 39562250
Alignment:
Q  7 tccgcgcacaactgcgaagactaatccatcgaattttgtgagattcaaatgagtgacaaact 68  Q
    |||| ||||||||||| ||| |||||| |||||| ||||| |||||||||| ||||||||||    
T  39562311 tccgagcacaactgcggagattaatccttcgaatattgtgggattcaaatgggtgacaaact 39562250  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 15386108 - 15386180
Alignment:
Q  19 tgcgaagactaatccatcga-attttgtgagattcaaatgagtgacaaactctccctaaaaattttaatgttg 90  Q
    |||| ||||||||||||||| |  ||||| |||||||||||||| |||||||| ||||| |||||||| ||||    
T  15386108 tgcggagactaatccatcgagacattgtgggattcaaatgagtggcaaactcttcctaagaattttaacgttg 15386180  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 10571736 - 10571657
Alignment:
Q  14 acaactgcgaagactaatccatcgaattttgtgagattcaaatgagtgacaaactctccctaaaaattttaatgttgttg 93  Q
    ||||||||| | ||||||||||| |||||||| | | ||||||||| |||||||||| || ||||  ||||| |||||||    
T  10571736 acaactgcggaaactaatccatcaaattttgttaaactcaaatgagcgacaaactcttcccaaaaggtttaacgttgttg 10571657  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 39950350 - 39950255
Alignment:
Q  15 caactgcgaagactaatccatcgaattttgtgagattcaaatgagtgacaaactctccctaaaaattttaatgttgttgtatgtccaaaactggat 110  Q
    |||||||| |||||||||| ||||   ||||  ||| |||||||  |||| | |||||||||||||||||| | || || ||||||||||||||||    
T  39950350 caactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctgcatgtccaaaactggat 39950255  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 55123243 - 55123165
Alignment:
Q  7 tccgcgcacaactgcgaagactaatccatcgaattttgtgagattcaaatgagtgacaaactctccctaaaaattttaa 85  Q
    ||||||| ||||||||||||||||||| ||||   ||||||||  |||||| ||  ||| |||||||||| ||||||||    
T  55123243 tccgcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaa 55123165  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 7468556 - 7468601
Alignment:
Q  27 ctaatccatcgaattttgtgagattcaaatgagtgacaaactctcc 72  Q
    ||||||| |||||| |||||||||||||||| ||| ||||||||||    
T  7468556 ctaatccctcgaatcttgtgagattcaaatgggtggcaaactctcc 7468601  T

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