View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_4 (Length: 582)
Name: NF13860_low_4
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Complemental strand, 39174509 - 39173967
Alignment:
| Q |
18 |
atgaagagtgtaagatatgtaaaagagggagaagacagagtaatgtaaaatgagagagagtttacagcgattggaaggaaatggtattccttgaaactgt |
117 |
Q |
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| T |
39174509 |
atgaagagtgtaagatatgtaaaagagggagaagacagagtgatgtaaaatgagagagagtttacagcgattggaaggaaatggtattccttgaaactgt |
39174410 |
T |
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| Q |
118 |
gaccctcggaaagggattgagaatgaggtaaaattgattgacgagaggttacatttgtttattttgttttaacaaacaaatacagtatggtcatggactc |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39174409 |
gacccttggaaagggattgagaatgaggtaaaattgattgacgagaggttacatttgtttattttgttttaacaaacaaatacagtatggtgatggactc |
39174310 |
T |
|
| Q |
218 |
atgggtcctttccaattaaaatcgacaataaagatgattgatgacgcctctcagaggtagaagctcgtgggtttcctcgttcttatagatgagacggtga |
317 |
Q |
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| T |
39174309 |
atgggtcctttccaattaaaatcgacaataaagatgattgatgatgcctctcagaggtagaagctcgtgggtttcctcgttcttatagatgagacggtga |
39174210 |
T |
|
| Q |
318 |
cccaattgtttcttcgacaacaataagcaaaatgaaaatgagttaaattttcagagattgatattcattttctcttgtttttgttaaattggaatcaatc |
417 |
Q |
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| T |
39174209 |
cccaattgtttcttcgacaacaataagcaaaatgaatatgagttaaattttcagagattgatattcattttctcttgtttttgttaaattggaatcaatc |
39174110 |
T |
|
| Q |
418 |
aagttactgtcttggatgaggaagaccattaaattttacttccaaaagaggacgtctgttattgttggagatgtgagcttcttttttctacaccataatg |
517 |
Q |
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| T |
39174109 |
aagttactgtcttggatgaggaagaccattaaattttacttccaaaagaggacgtctgttattgttggagatgtgagcttcttttttctacaccataatg |
39174010 |
T |
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| Q |
518 |
ttactttgctacgttagttcctgaatcatcttcacaaatatct |
560 |
Q |
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| T |
39174009 |
ttactttgttacgttagttcctgaatcatcttcacaaatatct |
39173967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 104 - 560
Target Start/End: Complemental strand, 39170794 - 39170344
Alignment:
| Q |
104 |
ttccttgaaactgtgaccctcggaaagggattgagaatgaggtaaaattgattgacgagaggttacatttgtttattttgttttaacaaacaaatacagt |
203 |
Q |
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| T |
39170794 |
ttccttgaaaatgtgaccctcgggaagggattgagaatgaggtagaattgattgacgaggggttacatttgtttattttgttttaacaaacaaatacagt |
39170695 |
T |
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| Q |
204 |
atggtcatggactcatgggtcctttccaattaaaatcgacaataaagatgattgatgacgcctctcagaggtagaagctcgtgggtttcctcgttcttat |
303 |
Q |
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| T |
39170694 |
atggtaatggactcatgggtcctttccaattaaaatcgacaataaagatgattgatgacacctctcagaggta------cgtgggtttcctcgttcttat |
39170601 |
T |
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| Q |
304 |
agatgagacggtgacccaattgtttcttcgacaacaataagcaaaatgaaaatgagttaaattttcagagattgatattcattttctcttgtttttgtta |
403 |
Q |
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| T |
39170600 |
agatgagacggagacccaattgtttcttcgacaacaataagaaaaacgaatatgagttaaattttcagagattgatattcattttctcctgtttttgtta |
39170501 |
T |
|
| Q |
404 |
aattggaatcaatcaagttactgtcttggatgaggaagaccattaaattttacttccaaaagaggacgtctgttattgttggagatgtgagcttcttttt |
503 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39170500 |
aactggaatcgatcaagttactgtcttggatgaggaagaccgttaaattttacttccaaaagaggacgtctgttcttgttggagatgtgagcttcttttt |
39170401 |
T |
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| Q |
504 |
tctacaccataatgttactttgctacgttagttcctgaatcatcttcacaaatatct |
560 |
Q |
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| T |
39170400 |
tctacaccataatgttactttgttatgttagttcctgaatcatcttcacaaatatct |
39170344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 39172587 - 39172650
Alignment:
| Q |
159 |
cgagaggttacatttgtttattttgttttaacaaacaaatacagtatggtcatggactcatggg |
222 |
Q |
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| T |
39172587 |
cgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatggg |
39172650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 39176307 - 39176366
Alignment:
| Q |
18 |
atgaagagtgtaagatatgtaaaagagggagaagacagagtaatgtaaaatgagagagag |
77 |
Q |
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|||||||||| |||| |||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
39176307 |
atgaagagtgcaagaaatgtaaaagagggagaagcaagagtaaagtagaatgagagagag |
39176366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 39172441 - 39172530
Alignment:
| Q |
18 |
atgaagagtgtaagatatgtaaaagagggagaagacagagtaatgtaaaatgagagagagtttacagcgattggaaggaaatggtattcc |
107 |
Q |
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|||||||||| |||| ||| |||| || |||||||||| ||| ||| ||||||||||| ||||||| || ||||||||||||| |||| |
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| T |
39172441 |
atgaagagtgcaagaaatggaaaatagaaagaagacagactaaagtagaatgagagagatcttacagcaatgggaaggaaatggtgttcc |
39172530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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