View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13860_low_5 (Length: 577)

Name: NF13860_low_5
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13860_low_5
NF13860_low_5
[»] chr5 (2 HSPs)
chr5 (12-74)||(42133636-42133698)
chr5 (32-75)||(19409770-19409812)
[»] chr7 (3 HSPs)
chr7 (12-75)||(18479235-18479298)
chr7 (12-74)||(18484070-18484132)
chr7 (31-74)||(24280256-24280299)
[»] chr8 (2 HSPs)
chr8 (12-71)||(19873913-19873972)
chr8 (12-71)||(21032041-21032100)
[»] chr1 (1 HSPs)
chr1 (12-74)||(14507005-14507067)
[»] scaffold0933 (1 HSPs)
scaffold0933 (31-71)||(3985-4025)
[»] chr6 (1 HSPs)
chr6 (12-60)||(28522098-28522146)
[»] scaffold0570 (1 HSPs)
scaffold0570 (30-62)||(2966-2998)


Alignment Details
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 42133636 - 42133698
Alignment:
Q  12 tactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataata 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42133636 tactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataata 42133698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 19409812 - 19409770
Alignment:
Q  32 atgagaattaagagtttcattcatttctctccaagtcataatag 75  Q
    ||||||||||||||||||||||||||||||| || |||||||||    
T  19409812 atgagaattaagagtttcattcatttctctctaa-tcataatag 19409770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 18479298 - 18479235
Alignment:
Q  12 tactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataatag 75  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18479298 tactgtactcttttgacataatgagaattaagagtttcattcatttctctctaagtcataatag 18479235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 18484132 - 18484070
Alignment:
Q  12 tactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataata 74  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  18484132 tactgtactcttttgacataatgagaattaagagtttcattcatttctctctaagtcataata 18484070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 24280299 - 24280256
Alignment:
Q  31 aatgagaattaagagtttcattcatttctctccaagtcataata 74  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  24280299 aatgagaattaagagtttcattcatttctctctaagtcataata 24280256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 19873913 - 19873972
Alignment:
Q  12 tactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcata 71  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  19873913 tactgtactctttttagataatgagaattaagagtttcattcatttctctctaagtcata 19873972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 21032100 - 21032041
Alignment:
Q  12 tactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcata 71  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  21032100 tactgtactcttttcagataatgagaattaagagtttcattcatttctctctaagtcata 21032041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 14507067 - 14507005
Alignment:
Q  12 tactgtactcttttgagataatgagaattaagagtttcattcatttctctccaagtcataata 74  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||    
T  14507067 tactgtactcttttcatctaatgagaattaagagtttcattcatttctctccaagtcataata 14507005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 3985 - 4025
Alignment:
Q  31 aatgagaattaagagtttcattcatttctctccaagtcata 71  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  3985 aatgagaattaagagtttcattcatttctctctaagtcata 4025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 28522146 - 28522098
Alignment:
Q  12 tactgtactcttttgagataatgagaattaagagtttcattcatttctc 60  Q
    ||||| |||||||| |  |||||||||||||||||||||||||||||||    
T  28522146 tactgcactcttttcatctaatgagaattaagagtttcattcatttctc 28522098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 2966 - 2998
Alignment:
Q  30 taatgagaattaagagtttcattcatttctctc 62  Q
    |||||||||||||||| ||||||||||||||||    
T  2966 taatgagaattaagagattcattcatttctctc 2998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University