View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_high_13 (Length: 225)
Name: NF13861_high_13
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 35742570 - 35742753
Alignment:
| Q |
20 |
gtcaattccttacaagggaggaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgacc |
119 |
Q |
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| T |
35742570 |
gtcaattccttacaagggag---gtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaca |
35742666 |
T |
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| Q |
120 |
aaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
206 |
Q |
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| T |
35742667 |
aaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
35742753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 35748958 - 35749116
Alignment:
| Q |
46 |
gacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgt |
145 |
Q |
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| T |
35748958 |
gacagtatatggcatttgatcgacatgtgttccgtagttcaaaagctcgagatgtttaatatccctcctagacaagaacggaatccacgtactgaggaat |
35749057 |
T |
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| Q |
146 |
tcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcgg |
204 |
Q |
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| T |
35749058 |
tcaattatgatcttgaaattgtagtcataaggtatgaaaagatgaaacttatgtatcgg |
35749116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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