View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_high_2 (Length: 588)
Name: NF13861_high_2
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 126 - 576
Target Start/End: Complemental strand, 37338360 - 37337925
Alignment:
| Q |
126 |
cttgaaagttgaaacagcacaatcatatgaatatccggaattgattatttccatgatctcatctcatgcatgcaatgccgcattttcttgaggcttatta |
225 |
Q |
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| T |
37338360 |
cttgaaagttgaaacaacacaatcatatgaatatccggaattgattatttccatgatctcatctcatgcatgcaatgccgcattttcttgaggcttatta |
37338261 |
T |
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| Q |
226 |
ttccgtgactacaacnnnnnnnnnnnntaacgacgaaacgtataaagtaaaatactttggtttgattttttaatccatacaatttttgaattcaactttt |
325 |
Q |
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| T |
37338260 |
ttccgtgactacaacaaaaacaaaaaataacgacgaaacgtata--gtaaaatactttggtttgattttttaatccata-----------ttcaactttt |
37338174 |
T |
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| Q |
326 |
atccttagaccggcatcatattatcggatatatacatatatattatgaggtcactctcctaaagtccaaatacttttcatagtcccaaccgtctataaat |
425 |
Q |
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| T |
37338173 |
atccttagaccggcatcatattatcggatatatacatatag--tatgaggtcactctcctaaagtccaaatacttttcatagtcccaaccgtctataaat |
37338076 |
T |
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| Q |
426 |
acaatcctttttctcctttgaattatgcatcactaacaaattacaacctagccaataatacttacttcacctattcacaaatatatcactatggctaact |
525 |
Q |
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| T |
37338075 |
acaatcctttttctcctttcaattatgcatcactaacaaattacaacctagccaataatactaacttcacctattcacaaatatatcactatggctaact |
37337976 |
T |
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| Q |
526 |
ccaaaaccctattatgcctaaccttcttcacaacctttctcttttcttcct |
576 |
Q |
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| T |
37337975 |
ccaaaaccctattatgcctaaccttcttcacaacctttctcttttcttcct |
37337925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 37338471 - 37338393
Alignment:
| Q |
15 |
acaatataatcaacaacacctcatagtttttggaatcaagcccatgatctgactttattaccttatatttgaatctgtt |
93 |
Q |
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| T |
37338471 |
acaatataatcaacaacacctcatagtttttggaatcaagcccatgatctgactttattaccttatatttgaatctgtt |
37338393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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