View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_high_8 (Length: 342)
Name: NF13861_high_8
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_high_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 4760959 - 4761300
Alignment:
| Q |
1 |
ttaacactttcaacagctccgaacccgttaccctttgtaactgaacccccaggttctggaagctccacaaacacaacctctccaagatggtcctgcaacc |
100 |
Q |
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| T |
4760959 |
ttaacactttcaacagctccgaaaccattaccctttgtaactgaacccccaggttctggaagctccacaaacacaacctctccaagatggtcctgcaacc |
4761058 |
T |
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| Q |
101 |
aacaagtgcaattaattaaacagtttcagccttcacctaagttgtaaattgtaatgattatgttagtatattagttttatgttagtagtttctctttcgt |
200 |
Q |
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| T |
4761059 |
aacaagtgcaattaattaaacagtttcagccttcacctaagttgtaaattgtaatgattatgttagtatattagctttatgttagtagtttctctttcgt |
4761158 |
T |
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| Q |
201 |
cagggtttgaatctcgatcattttcctactttaacccttagctcaattcagtcaagttatgtagttcagttctaagttgcagtagttaaagtctaattca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4761159 |
cagggtttgaatctcgatcattttcctactttaacccttagctcaattcagtcaagttatgtagttcagttataagttgcagtagttaaagtctaattca |
4761258 |
T |
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| Q |
301 |
atttacatgcataaacatactagagacccatacacgaacata |
342 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4761259 |
atttacatgcatacacatactagagacccatacacgaacata |
4761300 |
T |
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