View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_low_1 (Length: 654)
Name: NF13861_low_1
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 64 - 626
Target Start/End: Complemental strand, 20904116 - 20903553
Alignment:
| Q |
64 |
aagcttataggattttggatggggtggaaggtgtcaagcctgatgtttttggttacaatgtggtgattggttggttgtgtaaagaagggaaatggagtga |
163 |
Q |
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| T |
20904116 |
aagcttataggattttggatggggtggaaggtgtcaagcctgatgtttttggttacaatgtggtgattggttggttgtgtaaagtagggaaatggagtga |
20904017 |
T |
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| Q |
164 |
agcaaatgatcttgttcaggatatgccgcggagaaagtgtgttcccgatgttgtaacataccgtacgctgtttgatgggctttgtcggtggacgcagttc |
263 |
Q |
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| T |
20904016 |
agcaaatgatcttgttcaggatatgccgcggagaaagtgtgttcccgatgttgtaacataccgtacgctgtttgatgggctttgtcggtggacgcagttc |
20903917 |
T |
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| Q |
264 |
cgggaagctgctattgtcttggatgagatgttgtttaaaggatatgttccccataccaagagtttgaatgaatttgtctgtgggttgtgtagggaaggta |
363 |
Q |
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| T |
20903916 |
cgggaagctgctattgtcttggatgagatgttgtttaaaggatatgttccccataccaagagtttgaatgaatttgtctgtgggttgtgtagggaaggta |
20903817 |
T |
|
| Q |
364 |
attttgagttgttgtcaacagttttgagtggtttcgccagtagaggagaattctgtaacgagggtatatggaatgttttggtttccgtggtttgcaaaca |
463 |
Q |
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| T |
20903816 |
attttgagttgctgtcaacggttttgagtggtttggccagtagaggagaattctgtaacgagggtatatggaatgttttggtttccgtggtttgcaaaca |
20903717 |
T |
|
| Q |
464 |
ggaaaagctggcagcagaaccttttgaaattttcaaagccttggcggtatcatgaactgtattgttgatctaattctctccgaaagagtatgtactttct |
563 |
Q |
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| T |
20903716 |
ggaaaagctggcagcagaaccttttaaaattttcaaagccttggcggtatcatgaactgtattgtcgatctaattctctccgaaagagtatgtactttct |
20903617 |
T |
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| Q |
564 |
ctccttgctattcaatatgtaactgagttacatttgcagttaag-aagaaaatatatctagact |
626 |
Q |
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| T |
20903616 |
ctccttgctattcaatatgtaactgagttacatttgcagttaagaaaaaaaatatatctagact |
20903553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 64 - 450
Target Start/End: Complemental strand, 20128324 - 20127938
Alignment:
| Q |
64 |
aagcttataggattttggatggggtggaaggtgtcaagcctgatgtttttggttacaatgtggtgattggttggttgtgtaaagaagggaaatggagtga |
163 |
Q |
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| T |
20128324 |
aagcttataggattttggatggggtggaaggtgtcaagcctgatgtttttggttacaatgtggtgattggttggttgtgtaaagtagggaaatggagtga |
20128225 |
T |
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| Q |
164 |
agcaaatgatcttgttcaggatatgccgcggagaaagtgtgttcccgatgttgtaacataccgtacgctgtttgatgggctttgtcggtggacgcagttc |
263 |
Q |
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| T |
20128224 |
agcaaatgatcttgttcaggatatgccgcggagaaagtgtgttcccgatgttgtaacataccgtacgctgtttgatgggctttgtcggtggacgcagttc |
20128125 |
T |
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| Q |
264 |
cgggaagctgctattgtcttggatgagatgttgtttaaaggatatgttccccataccaagagtttgaatgaatttgtctgtgggttgtgtagggaaggta |
363 |
Q |
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| T |
20128124 |
cgggaagctgctattgtcttggatgagatgttgtttaaaggatatgttccccataccaagagtttgaatgaatttgtctgtgggttgtgtagggaaggta |
20128025 |
T |
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| Q |
364 |
attttgagttgttgtcaacagttttgagtggtttcgccagtagaggagaattctgtaacgagggtatatggaatgttttggtttccg |
450 |
Q |
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| T |
20128024 |
attttgagttgctgtcaacggttttgagtggtttggccagtagaggagaattctgtaacgagggtatatggaatgttttggtttccg |
20127938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 20113957 - 20114001
Alignment:
| Q |
19 |
gtaatgtaatgattggggagttttgtagacaaaagaatttccaag |
63 |
Q |
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| T |
20113957 |
gtaatgtaatgattggggagttttgtagacaaaagaatttccaag |
20114001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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