View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_low_11 (Length: 264)
Name: NF13861_low_11
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 51417996 - 51417752
Alignment:
| Q |
1 |
gtagctatagtagtgaagtataatcatgacagttttattgtgatcgtccttctttttccattctttcaatgttattggaactccttttaattaattaatt |
100 |
Q |
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| T |
51417996 |
gtagctatagtagtgaagtataatcatgacacttttattgtgatcgtccttctttttccattctttctatgttattggaactccttttaattaattaatt |
51417897 |
T |
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| Q |
101 |
tttctttggcatgctttaaatttgttaattttcgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaa |
200 |
Q |
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| T |
51417896 |
tttctttggcatgctttaaatttgttaattttcgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaa |
51417797 |
T |
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| Q |
201 |
ctggtataaagaagcttatcggcaattaaaagttagtaaaatgat |
245 |
Q |
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| T |
51417796 |
ctggtataaagaagcttatcggcaattaaaagttagtaaaatgat |
51417752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 51412949 - 51412871
Alignment:
| Q |
10 |
gtagtgaagtataatcatgacagttttattgtgatcgtccttctttttccattctttcaatgttattggaactcctttt |
88 |
Q |
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| T |
51412949 |
gtagtgaactataatcatgacagtttcattgtgcttgtctttctttttccttactttccttgttattggaacttctttt |
51412871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 33 - 245
Target Start/End: Complemental strand, 29323615 - 29323411
Alignment:
| Q |
33 |
ttttattgtgatcgtccttctttttccattctttcaatgttattggaactccttttaattaattaatttttctttggcatgctttaaatttgttaatttt |
132 |
Q |
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| T |
29323615 |
ttttattgtgactgtccttctttttcctttctttctatgttattggaactccttttaattaatttatttttctttggcatgcttt------gttaatttt |
29323522 |
T |
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| Q |
133 |
cgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaactggtataaagaagcttatcggcaattaaaag |
232 |
Q |
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| T |
29323521 |
cgttagttga--caatttaattaaatgtgtccttgaacaagttctgtcttggtgctaaagagttcaaagtggtataaagaaacttatcagcaattaaaag |
29323424 |
T |
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| Q |
233 |
ttagtaaaatgat |
245 |
Q |
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||||||||||||| |
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| T |
29323423 |
ttagtaaaatgat |
29323411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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