View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_low_3 (Length: 579)
Name: NF13861_low_3
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 98 - 560
Target Start/End: Complemental strand, 380396 - 379931
Alignment:
| Q |
98 |
gataaccataagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagc |
197 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
380396 |
gataaccatgagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaaccttacctcttttagcatttgtgatcacgttcatcattgaagc |
380297 |
T |
|
| Q |
198 |
ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380296 |
ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca |
380197 |
T |
|
| Q |
298 |
cctcttccaacaaacaattctacaaactcgttagcag--actgtg-aaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgcca |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
380196 |
cctcttccaacaaacaattctacaaactcgttagcagatactgtgaaaaaagggtacacctgctccccccgctactgcatgcgcaagtaatgtcttgcca |
380097 |
T |
|
| Q |
395 |
gttcctggaggaccgactagcaatactcctctgggtagctcgtcagatgtaatggtcaaatctcaaagcaatacagattggaaatcaatgaatactccct |
494 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380096 |
gttcctggaggactgactagcaatactcctctgggtagctcgtcagatgtaatggtcaaatctcaaagcaatacagattggaaatcaatgaatactccct |
379997 |
T |
|
| Q |
495 |
ccatgcacataaaacatttcaaagtcgaatattttgatgcaatcaggactatttttgtgacaatgc |
560 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
379996 |
ccatgcacataaaacattttaaagtcgaatattttgatgcaatcgggactatttttgtgacaatgc |
379931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 6300454 - 6300039
Alignment:
| Q |
19 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcat |
118 |
Q |
| |
|
|||||||||||||||| ||| |||| | |||||| |||||| |||| |||||| | ||| ||||||| || |||||||||||| || |||| ||| | |
|
|
| T |
6300454 |
atacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaa |
6300355 |
T |
|
| Q |
119 |
ttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaa |
218 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || ||||||| ||||||||||| || ||||| |||||||||| |||||||||||||| |||| |
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|
| T |
6300354 |
ttgttgctagaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaa |
6300258 |
T |
|
| Q |
219 |
ccgcatcaagttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaacaaacaattc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
6300257 |
ccgcatcaagttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttc |
6300158 |
T |
|
| Q |
318 |
tacaaactcgttagcaga--ctgtgaaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgccagttcctggaggaccgactagc |
415 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6300157 |
tacaaactcactagcagatactgtgaaaaagggtacacctgcttcccccgctactgcacgtgcaagtaatgtcttgccagttcctggaggaccgactagc |
6300058 |
T |
|
| Q |
416 |
aatactcctctgggtagct |
434 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
6300057 |
aacactcctctgggtagct |
6300039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 6307264 - 6306849
Alignment:
| Q |
19 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcat |
118 |
Q |
| |
|
|||||||||||||||| ||| |||| | |||||| |||||| |||| |||||| | ||| ||||||| || |||||||||||| || |||| ||| | |
|
|
| T |
6307264 |
atacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaa |
6307165 |
T |
|
| Q |
119 |
ttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaa |
218 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || ||||||| ||||||||||| || ||||| |||||||||| |||||||||||||| |||| |
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|
| T |
6307164 |
ttgttgctagaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaa |
6307068 |
T |
|
| Q |
219 |
ccgcatcaagttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaacaaacaattc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
6307067 |
ccgcatcaagttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttc |
6306968 |
T |
|
| Q |
318 |
tacaaactcgttagcaga--ctgtgaaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgccagttcctggaggaccgactagc |
415 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6306967 |
tacaaactcactagcagatactgtgaaaaagggtacacctgcttcccccgctactgcacgtgcaagtaatgtcttgccagttcctggaggaccgactagc |
6306868 |
T |
|
| Q |
416 |
aatactcctctgggtagct |
434 |
Q |
| |
|
|| |||||||||||||||| |
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|
| T |
6306867 |
aacactcctctgggtagct |
6306849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 382235 - 382140
Alignment:
| Q |
16 |
aatatacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagtt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
382235 |
aatatacacaccagagatttgtattgatttaattcagtttagtatcgaatcaagatatgtctcacatgcatcttaagatattgataaccatgagtt |
382140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 437 - 560
Target Start/End: Complemental strand, 6299353 - 6299234
Alignment:
| Q |
437 |
tcagatgtaatggtcaaatctcaaagcaatacagattggaaatcaatgaatactccctccatgcacataaaacatttcaaagtcgaatattttgatgcaa |
536 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
6299353 |
tcagatgcaatggtcaaatctcaaagcaatacagaatggaaatcagtgaatactcc----atgcatatcaaacatttcaaagtctaatattttgatgcaa |
6299258 |
T |
|
| Q |
537 |
tcaggactatttttgtgacaatgc |
560 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
6299257 |
tcagggttatttttgtgacaatgc |
6299234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 437 - 560
Target Start/End: Complemental strand, 6306163 - 6306044
Alignment:
| Q |
437 |
tcagatgtaatggtcaaatctcaaagcaatacagattggaaatcaatgaatactccctccatgcacataaaacatttcaaagtcgaatattttgatgcaa |
536 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
6306163 |
tcagatgcaatggtcaaatctcaaagcaatacagaatggaaatcagtgaatactcc----atgcatatcaaacatttcaaagtctaatattttgatgcaa |
6306068 |
T |
|
| Q |
537 |
tcaggactatttttgtgacaatgc |
560 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
6306067 |
tcagggttatttttgtgacaatgc |
6306044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 30863989 - 30864065
Alignment:
| Q |
19 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagata |
95 |
Q |
| |
|
|||||||| |||||||||||| |||| | |||| |||||||| ||||| ||||| | |||||||| ||| ||||||| |
|
|
| T |
30863989 |
atacacactagagatttgtatcgattgagttcattttagtattgaatcgagatacgactcacatgtatcgtaagata |
30864065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 30035413 - 30035336
Alignment:
| Q |
29 |
gagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccat |
106 |
Q |
| |
|
||||||||||| |||| |||||| || ||||| |||| ||||| | |||||||| ||| ||||||| |||||||||| |
|
|
| T |
30035413 |
gagatttgtatcgattgaattcaattaagtattgaattgagatacgactcacatgtatcataagatactgataaccat |
30035336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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