View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_low_4 (Length: 513)
Name: NF13861_low_4
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Original strand, 30768104 - 30768598
Alignment:
| Q |
7 |
gtgaaatgaaagctgaattatggttaccttgattctcacttaattgtcttaaaagatgaaaactgtaaccattagattctgatgtttctccaacaaccat |
106 |
Q |
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| T |
30768104 |
gtgaaatgaaagctgaattatggttaccttgattctcacttaattgtcttaaaagatgaaaactgtaaccattagattctgatgtttctccaacaaccat |
30768203 |
T |
|
| Q |
107 |
tccacttgagtttgcaactacattctgaacttcttctagaggtttcagagtttgattttcgccgattggatgccatggaggaagctccgcgagcttgtca |
206 |
Q |
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| T |
30768204 |
tccacttgagtttgcaactacattctgaacttcttctagaggtttcagagtttgattttcgctgattggatgccatggaggaagctccgcgagcttgtca |
30768303 |
T |
|
| Q |
207 |
atggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtg |
306 |
Q |
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| T |
30768304 |
atggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtg |
30768403 |
T |
|
| Q |
307 |
ctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctac |
406 |
Q |
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| T |
30768404 |
ctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctac |
30768503 |
T |
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| Q |
407 |
ttgaactatctctcctccagtactcctcatccctagttctcaccttctctatgctttctatggaaagttgtttctatttggtggggttggttttg |
501 |
Q |
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| T |
30768504 |
ttgaactatctctcctccagtactcctcatccctagttcccaccttctctatgctttctatgaaaagttgtttctatttggtggggttggttttg |
30768598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 424
Target Start/End: Original strand, 39077242 - 39077495
Alignment:
| Q |
171 |
attggatgccatggaggaagctccgcgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggc |
270 |
Q |
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||||||| |||||| ||||||| | || |||||||||| |||||| || || ||||| |||||||| || ||||| || ||||||||||||||||| | |
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| T |
39077242 |
attggattccatggtggaagctgatcaagtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagac |
39077341 |
T |
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| Q |
271 |
gatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttt |
370 |
Q |
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| T |
39077342 |
ggtcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttt |
39077441 |
T |
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| Q |
371 |
tttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctcc |
424 |
Q |
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| T |
39077442 |
tctacctgtcgcccttacaatgtggcctccttgaacttgaactatttctcctcc |
39077495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 370
Target Start/End: Complemental strand, 22328097 - 22327946
Alignment:
| Q |
219 |
gctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaa |
318 |
Q |
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||||| || ||||||||||| |||||||| ||||| | |||||||||||| |||||||| || |||||||||| || || ||||| ||||||||||| | |
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| T |
22328097 |
gcttttttaatgagccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgta |
22327998 |
T |
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| Q |
319 |
ccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttt |
370 |
Q |
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| T |
22327997 |
cacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtcttt |
22327946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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