View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_low_5 (Length: 457)
Name: NF13861_low_5
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 34054883 - 34055321
Alignment:
| Q |
1 |
ccagcctattcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggctataactgttgtccgacagcctcctttcacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
34054883 |
ccagcctattcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggttataactgttgtccgacagcctcctttcacaa |
34054982 |
T |
|
| Q |
101 |
tcacactgcttccaacatttgatgtcattataagaagtgttcttgaagtcaacagttcttcccttactgtctgttaacctcccatctcccaggatttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34054983 |
tcacactgcttccaacatttgatgtcattataagaagtgttcttgaagtcaacagttcttcccttactgtctgttaacctcccatctcccaggatttgaa |
34055082 |
T |
|
| Q |
201 |
gcatcatgttgaagacatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagtcagttgaccaccctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34055083 |
gcatcatgttgaagacatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaacttcctcagtcagttgaccaccctt |
34055182 |
T |
|
| Q |
301 |
ggtataaccagcatatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcatagaatggtagatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34055183 |
ggtataaccagcatatgcatgaagtgagccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatcatagaatggtagatg |
34055282 |
T |
|
| Q |
401 |
aacaatagacaagaactgctggtccggagatggtagata |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34055283 |
aacaatagacaagaactgctggtccggagatggtagata |
34055321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 88 - 387
Target Start/End: Complemental strand, 47382992 - 47382691
Alignment:
| Q |
88 |
cctcctttcacaatcacactgcttccaacatttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacctcccat |
185 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||| |
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|
| T |
47382992 |
cctcctttctcaatcacactgcttccaacatttgatgtcattataagaagtgtgttcttgaagtcgacagttcttcccttactatctgttagcctcccat |
47382893 |
T |
|
| Q |
186 |
ctcccaggatttgaagcatcatgttgaagacatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcagt |
285 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |
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|
| T |
47382892 |
cttccagaatttgaagcatcatattgaagacatcaggatgggctttctcaatctcatcaaagagtacaacagtatagggacggcgccgaactgcctcagt |
47382793 |
T |
|
| Q |
286 |
cagttgaccacccttggtataaccagcatatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaatc |
385 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||| || || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| |
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|
| T |
47382792 |
caattgaccaccctcggtataaccaacatatccaggaggtgaaccgatgagtttggagactgtgtgccgttccataaattcgctcatgtcaagccgaatc |
47382693 |
T |
|
| Q |
386 |
at |
387 |
Q |
| |
|
|| |
|
|
| T |
47382692 |
at |
47382691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 87 - 387
Target Start/End: Complemental strand, 45115942 - 45115640
Alignment:
| Q |
87 |
gcctcctttcacaatcacactgcttccaacatttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacctccca |
184 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||| || |||||||| |||| || ||| |
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|
| T |
45115942 |
gcctcctttctcaatcacactgcttccaacatttgacgtcattataagaagtgtgttcttgaaatccacagttcggcctttactgtccgttagtcttcca |
45115843 |
T |
|
| Q |
185 |
tctcccaggatttgaagcatcatgttgaagacatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgcctcag |
284 |
Q |
| |
|
||| | ||||| ||||||||||||||||| |||||| |||| |||||||| |||||||||||| ||||||||||||| ||||| || | |||||| |||| |
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|
| T |
45115842 |
tcttcaaggatctgaagcatcatgttgaatacatcaggatgagctttctcgatctcatcaaagagtacaacagtgtaaggacgacgacgaactgcttcag |
45115743 |
T |
|
| Q |
285 |
tcagttgaccacccttggtataaccagcatatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagccaaat |
384 |
Q |
| |
|
||| |||||||| | ||| |||||| ||||| || || ||||||| || ||||||||||| ||| | ||||||||| |||||||||||||| | ||| |
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|
| T |
45115742 |
tcaactgaccaccttcggtgtaaccaacatatccaggaggtgaaccaataagtttggagacagtgtgcctttccataaactcactcatgtcaagacgaat |
45115643 |
T |
|
| Q |
385 |
cat |
387 |
Q |
| |
|
||| |
|
|
| T |
45115642 |
cat |
45115640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 47818176 - 47817986
Alignment:
| Q |
1 |
ccagcctattcaagaactctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtccgacagcctcctt-tcac |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| || |||||||||||||| | | || | ||| |
|
|
| T |
47818176 |
ccagcctattcaagaactctggcctaaagtattgcttcagctcctcgatcaccaagcttttgattcggttataactgttgtccttct-catcatagtcaa |
47818078 |
T |
|
| Q |
99 |
aatca-cactgcttccaacatttgatgtcattataagaa--gtgttcttgaagtcaacagttcttcccttactgtctgttaacctcccatct |
187 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||| |||||||||| |
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|
| T |
47818077 |
ggtcagcactgcttccaacatttgatgtcattataagaagtgtgttcttgaagtcgacagttcttcccttactatcagttagcctcccatct |
47817986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 47383111 - 47383029
Alignment:
| Q |
1 |
ccagcctattcaagaactctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||| ||||| |
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|
| T |
47383111 |
ccagcctattcaagaactctggcctaaagtattgcttcagctcctcggtcaccaagcttttgattcggttataactgctgtcc |
47383029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 82 - 387
Target Start/End: Complemental strand, 40245712 - 40245405
Alignment:
| Q |
82 |
cgacagcctcctttcacaatcacactgcttccaacatttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacc |
179 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| || |
|
|
| T |
40245712 |
cgacggcctcctttctcgatcacactgcttccaacatttgatgtcattataagaagtgtgttcttgaagtccacagttcttcccttactatctgttagcc |
40245613 |
T |
|
| Q |
180 |
tcccatctcccaggatttgaagcatcatgttgaagacatcatgatgggctttctcaatctcatcaaagggtacaacagtgtagggacggcgccaaactgc |
279 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
40245612 |
tcccatcttccaggatttgaagcatcatgttgaagacatcaggatgggctttctcaatctcatcaaagagtacaaccgtgtagggacgacgccgaactgc |
40245513 |
T |
|
| Q |
280 |
ctcagtcagttgaccacccttggtataaccagcatatgcatgaagtgaaccgatgagtttggagactgtgcttcgttccataaattcactcatgtcaagc |
379 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| | || ||||||| |||||||||||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
40245512 |
ctcagtcagttgaccaccctcagtataaccaacatatcctggaggtgaaccaatgagtttggagactgtgtgcctttccatgaattcactcatgtcaaga |
40245413 |
T |
|
| Q |
380 |
caaatcat |
387 |
Q |
| |
|
| |||||| |
|
|
| T |
40245412 |
cgaatcat |
40245405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 40245823 - 40245743
Alignment:
| Q |
3 |
agcctattcaagaactctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||| |||||| ||||||| |||||| | |||||||| ||||| |
|
|
| T |
40245823 |
agcctattcaagaactctggcctaaagtattgtttcagctcttcggtcaccaagctcttgattctgttataactgctgtcc |
40245743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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