View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_low_6 (Length: 400)
Name: NF13861_low_6
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 42083225 - 42082876
Alignment:
| Q |
19 |
tcatattcaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagttgtgtt |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42083225 |
tcatattaaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgatgtcaatgtctcagttgtgtt |
42083126 |
T |
|
| Q |
119 |
tgttgtatcatctagaactgaatattgttttcttccttttggtggttgtgaaaacaggtggttgagtcattagtacccattgctgagatgtttatgtatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
42083125 |
tgttgtatcatctagaactgaatattgttttcttccttttggtggttgtgaaaacaggt----------------------gctgagatgtttctgtatg |
42083048 |
T |
|
| Q |
219 |
tcggtacacttagggtgctgacagagggccgtgcatcctactcaatgcagtttgacaggtttgatatggtatctcgaaacattcagaatgaaatttccac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |
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| T |
42083047 |
tcggtacacttagggtgctgacagagggccgtgcatcctactcaatgcagtttgacaggtttgatacggtatctcgaaacattcagaatgaacttaccac |
42082948 |
T |
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| Q |
319 |
aaattattgacaagaagttgctgcttaatggatttccttggtgtcctaatcaggaggattatcttccctttg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42082947 |
aaattattgacaagaagttgctgcttaatggatttccttggtgtcctaatcaggaggattatcttccctttg |
42082876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 131 - 395
Target Start/End: Complemental strand, 42086611 - 42086356
Alignment:
| Q |
131 |
tagaactgaatattgttttcttccttttggtggttgtgaaaacaggtggttgagtcattagtacccattgctgagatgtttatgtatgtcggtacactta |
230 |
Q |
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| T |
42086611 |
tagaactgaacattgttttcttccttttggtg------aaaacaggtggttgattcattagtacctcttgctgagatgtttcagtatgtcagtacactaa |
42086518 |
T |
|
| Q |
231 |
gggtgctgacagagggccgtgcatcctactcaatgcagtttgacaggtttgatatggtatctcgaaacattcagaatgaaatttccacaaattattgaca |
330 |
Q |
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| | | ||||| |||| |||||||| ||||| ||||| || | || ||||||| ||||| ||| | ||||||||||| || || ||||||| | || || |
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| T |
42086517 |
gagggatgacaaagggtcgtgcatcatactctatgcaattagccatgtttgatgtggtacctcaacacattcagaatcaacttgccacaaa--agtg-ca |
42086421 |
T |
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| Q |
331 |
agaagttgctgcttaatggatttccttggtgtcctaatcaggaggattatcttccctttgctact |
395 |
Q |
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||||||| |||| |||| |||||||||||||||||| || |||| ||||||||| |||| |||| |
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| T |
42086420 |
agaagtttctgcataatttatttccttggtgtcctaaccacgagggttatcttccttttgatact |
42086356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 42086738 - 42086665
Alignment:
| Q |
33 |
gacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgt |
106 |
Q |
| |
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| T |
42086738 |
gacgtatctggtgtccaatacttgtagttacattcaatttcatccatttttaaaattgttattgatgtcaatgt |
42086665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 22284482 - 22284533
Alignment:
| Q |
44 |
tgtccgacacttgtagttacattcaatttcttccatttttcaaattattatc |
95 |
Q |
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| T |
22284482 |
tgtccgacacatgcagttacattcaaatttttccatttttcaaattattatc |
22284533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 37603961 - 37603915
Alignment:
| Q |
55 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
101 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||| |||| |
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| T |
37603961 |
tgtatttacattcaatttcttccatttttcaaattgttatcggtgtc |
37603915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 3262086 - 3262022
Alignment:
| Q |
48 |
cgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
112 |
Q |
| |
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|||||| ||||||||| |||||||||||| ||||| |||||||||| ||||||||| ||||| |
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| T |
3262086 |
cgacacatgtagttactttcaatttcttctattttgaaaattattataaatgtcaatgtgtcagt |
3262022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 6933194 - 6933139
Alignment:
| Q |
57 |
tagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
112 |
Q |
| |
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||||||| ||||||||||||||||||||||| || ||||| |||| |||| ||||| |
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| T |
6933194 |
tagttactttcaatttcttccatttttcaaaatactatcggtgtcgatgtgtcagt |
6933139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 18626976 - 18626931
Alignment:
| Q |
50 |
acacttgtagttacattcaatttcttccatttttcaaattattatc |
95 |
Q |
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|||| |||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
18626976 |
acacatgtagttatattcagtttcttccagttttcaaattattatc |
18626931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 30922574 - 30922528
Alignment:
| Q |
55 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
101 |
Q |
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| T |
30922574 |
tgtagttacattcaatttattgcatttttctaattattatcattgtc |
30922528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 8217034 - 8217086
Alignment:
| Q |
55 |
tgtagttacattcaatttcttccatttt-tcaaattattatcgttgtcaatgt |
106 |
Q |
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||||||||||||||||| |||| ||||| | ||||||||||||||||| |||| |
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| T |
8217034 |
tgtagttacattcaattccttctattttctaaaattattatcgttgtctatgt |
8217086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 19629069 - 19629033
Alignment:
| Q |
59 |
gttacattcaatttcttccatttttcaaattattatc |
95 |
Q |
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||||||||||||| ||||||||||||||| ||||||| |
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| T |
19629069 |
gttacattcaattacttccatttttcaaagtattatc |
19629033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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