View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13861_low_9 (Length: 333)
Name: NF13861_low_9
Description: NF13861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13861_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 41594126 - 41593824
Alignment:
| Q |
13 |
aatatcgtatgttctctggctgctttttgatttaagaggaaaccttgctgctaaagacataaaggcagagctgcaaagagaagaatgaagcataatgttt |
112 |
Q |
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| T |
41594126 |
aatatcgtatgttctctggctgctttttgatttaagaggaaaccttgctgctaaagacataaaggcagagctgcaaagagaagaatgaagcataatgttt |
41594027 |
T |
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| Q |
113 |
ttatggggtttgcaaaacatcttgtactagcattggcaattttggcaaaacatcccaagtggtgaaaagtggaaaaacctgatatgataatatatgaatt |
212 |
Q |
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| T |
41594026 |
ttatggggtttgcaaaacatcttgtactagcattggcaattttggcaaaacatcccaagtgatgaaaagtggaaaaacctgatatgataatatttgaatt |
41593927 |
T |
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| Q |
213 |
taccttgaaagatggtctgagacattctgagtgagaaaaacaccgatcaccgagtcaaccacagatcctttccactttgaaaagcgtctatctcctgcat |
312 |
Q |
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| T |
41593926 |
taccttgaaagatggtctgagacattctgagtgagaaaaacaccgatcaccgagtcaaccacagatcctttccactttgaaaagcgtctatctcctgcat |
41593827 |
T |
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| Q |
313 |
agt |
315 |
Q |
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| T |
41593826 |
agt |
41593824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 41978655 - 41978582
Alignment:
| Q |
213 |
taccttgaaagatggtctgagacattctgagtgagaaaaacaccgatcaccgagtcaaccacagatcctttcca |
286 |
Q |
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| T |
41978655 |
tacctagatagatggtctgagacattttgagtgagaaaaactccaaccaccgaatccaccactgatcctttcca |
41978582 |
T |
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