View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_high_15 (Length: 363)
Name: NF13862_high_15
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 329
Target Start/End: Original strand, 6410098 - 6410425
Alignment:
| Q |
2 |
atggaaatgttcaatggagaaggcaacaagataaaagaagaggagattaagagtgctttttaagtatttgatataaatggagatgggaaaatcagtgctg |
101 |
Q |
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| T |
6410098 |
atggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgatataaatggagatgggaaaatcagtgctg |
6410197 |
T |
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| Q |
102 |
aggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttataagaaaatggtgaaaggggttgatggtgatggagatggtcttat |
201 |
Q |
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| T |
6410198 |
aggaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtgatggagatggtcttat |
6410297 |
T |
|
| Q |
202 |
tgatttgaatgagtttacaagaatgatgataaatggcaagaaatgtgcctaagtgattatattattccggtatagaggagaataatctggtttagtgttt |
301 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| | ||||||| | |||||| ||||||||||||| ||||| |
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| T |
6410298 |
tgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagtcatcatacttttccggtttggaggagcataatctggtttaatgttt |
6410397 |
T |
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| Q |
302 |
ctcaagtttttgtctatcttaaatatat |
329 |
Q |
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| T |
6410398 |
ctcaagtttatgtctatcttaaatatat |
6410425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 6399659 - 6399396
Alignment:
| Q |
1 |
tatggaaatgttcaatggagaaggcaacaagataaaagaagaggagattaagagtgctttttaagtatttgatataaatggagatgggaaaatcagtgct |
100 |
Q |
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| T |
6399659 |
tatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgct |
6399560 |
T |
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| Q |
101 |
gaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttataagaaaatggtgaaaggggttgatggtgatggagatggtctta |
200 |
Q |
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| T |
6399559 |
gaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatagtgatggagatggtctta |
6399460 |
T |
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| Q |
201 |
ttgatttgaatgagtttacaagaatgatgataaatggcaagaaatgtgcctaagtgattatatt |
264 |
Q |
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| T |
6399459 |
ttgatttgaatgagtttacaaggatgatgatgaatggcaagaaatgtgcctaagttatcatatt |
6399396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 6412843 - 6413106
Alignment:
| Q |
1 |
tatggaaatgttcaatggagaaggcaacaagataaaagaagaggagattaagagtgctttttaagtatttgatataaatggagatgggaaaatcagtgct |
100 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |
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| T |
6412843 |
tatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgct |
6412942 |
T |
|
| Q |
101 |
gaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttataagaaaatggtgaaaggggttgatggtgatggagatggtctta |
200 |
Q |
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| T |
6412943 |
gaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatagtgatggagatggtctta |
6413042 |
T |
|
| Q |
201 |
ttgatttgaatgagtttacaagaatgatgataaatggcaagaaatgtgcctaagtgattatatt |
264 |
Q |
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| T |
6413043 |
ttgatttgaatgagtttacaaggatgatgatgaatggcaagaaatgtgcctaagttatcatatt |
6413106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 6403072 - 6402916
Alignment:
| Q |
88 |
gaaaatcagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttataagaaaatggtgaaaggggttgatggtgat |
187 |
Q |
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| T |
6403072 |
gaaaattagtgctgatgaattgtctcaaatatttaagaggttaggagagagttgtagccttagtt---------------tgaaaggtgtcgatggtgat |
6402988 |
T |
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| Q |
188 |
ggagatggtcttattgatttgaatgagtttacaagaatgatgataaatggcaagaaatgtgcctaagtgatt |
259 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||| |
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| T |
6402987 |
ggagatggtcttattgatttgaatgagtttacaaggatgatgatgagtggcaagaaatgtgtctaagtgatt |
6402916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 6413154 - 6413214
Alignment:
| Q |
269 |
cggtatagaggagaataatctggtttagtgtttctcaagtttttgtctatcttaaatatat |
329 |
Q |
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| T |
6413154 |
cggtatagaggaaaataatatggtttagtgtttctcaagtttttgtttatctttaatatat |
6413214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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