View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_high_18 (Length: 330)
Name: NF13862_high_18
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 21775238 - 21775557
Alignment:
| Q |
1 |
aaggtttatttattctattctttccgtcatcctattgaattatgattgagatatgttgaaatcatgttttgtgact----gtc--tgtcacttgacctta |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
21775238 |
aaggtttatttattctattctttccgtcatcctattgaattatgattgagatatgttgaaatcatgttttgtgactatgtgtcagtgtcacttgacctta |
21775337 |
T |
|
| Q |
95 |
tttttcaattttctgtgtaagattattaatccattcatttgggaactttttaggtagggttcatccatatggtgcactttaaattattctgagaatcatt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21775338 |
tttttcaattttctgtgtaagattattaatccattcgttggggaactttttaggtagggttcatccatatggtgcactttaaattattctgagaatcatt |
21775437 |
T |
|
| Q |
195 |
gtacttcaaatta--ttgtgtggaaattttttatacaatattttaaacattcttgcaaaatatctcagaacatttgtcgactcgatagcgacgaaaattc |
292 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21775438 |
gtacttcaaattaatgtgtgtggaaattttttatacaatgttttaaacattcttgcaaaatatctcagaacatttgtcgactcgatagagacgaaaattc |
21775537 |
T |
|
| Q |
293 |
tttgctcgataagttaagaa |
312 |
Q |
| |
|
||||||||| |||| ||||| |
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| T |
21775538 |
tttgctcgacaagtgaagaa |
21775557 |
T |
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