View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_high_23 (Length: 251)
Name: NF13862_high_23
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 5840780 - 5840592
Alignment:
| Q |
50 |
gaaaaagcaatatttatttatcaaaagcccccc-gcagcagaagtgcagtaaaagagctggggaacaatacaaaaaagccaatcaaggccaaaccgctta |
148 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5840780 |
gaaaaaacaatatttatttatcaaaagcccccccgcagcagaagtgcagtaaaagagctggggaacaatacaaaaaagccaatcaaggccaaaccgctta |
5840681 |
T |
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| Q |
149 |
aacaacaacctagcgcaaagaaggcaacacgggcagaag-aaaaacaaaaatgcagcagcaagtagaaaacaaagccactacaaaaacc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5840680 |
aacaacaacctagcgcaaagaaggcaacacgggcagcagaaaaaacaaaaatgcagcagcaagtagaaaacaaagccactacaaaaacc |
5840592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 5846928 - 5846813
Alignment:
| Q |
50 |
gaaaaagcaatatttatttatcaaaagccccccgcagcagaagtgcagtaaaag------agctggggaacaatacaaaaaagccaatcaaggccaaacc |
143 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |
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| T |
5846928 |
gaaaaagcaatatttatttatcaaagcccccccgcagcagaagtgcagtaaaagtaaaagagatggggaacaatacaaaaaagcgaatcaaggccaaacc |
5846829 |
T |
|
| Q |
144 |
gcttaaacaacaacct |
159 |
Q |
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|||||||||||||||| |
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| T |
5846828 |
gcttaaacaacaacct |
5846813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5840830 - 5840798
Alignment:
| Q |
1 |
acctaattgaaaaactttaaacaaagacataca |
33 |
Q |
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| T |
5840830 |
acctaattgaaaaactttaaacaaagacataca |
5840798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5846976 - 5846944
Alignment:
| Q |
1 |
acctaattgaaaaactttaaacaaagacataca |
33 |
Q |
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||||||||||||||||||||||||||||| ||| |
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| T |
5846976 |
acctaattgaaaaactttaaacaaagacagaca |
5846944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 6349858 - 6350034
Alignment:
| Q |
61 |
atttatttatcaaaagccccccgcagcagaagtgcagtaaaagagctggggaacaatacaaaaaagccaatcaaggccaaaccgcttaaacaacaaccta |
160 |
Q |
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||||||| |||||||| |||| |||||||||||||| ||||||| | ||||| ||||| ||| ||| |||||||||||||| ||||||||||||||| |
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| T |
6349858 |
atttattaatcaaaagtcccctgcagcagaagtgcataaaaagagttatggaaccatacacaaa-gcctatcaaggccaaaccccttaaacaacaacctg |
6349956 |
T |
|
| Q |
161 |
gcgcaaagaaggca--acacgggcagaagaaaaacaaaaatgcagcagcaagtagaaaacaaagccactacaaaaacc |
236 |
Q |
| |
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||||| |||||||| |||| ||||| ||||||||||||| |||||||||| |||||||| ||||||||||| ||||| |
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| T |
6349957 |
gcgcatagaaggcaacacacaggcagcagaaaaacaaaaaagcagcagcaaatagaaaactaagccactacagaaacc |
6350034 |
T |
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