View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_high_28 (Length: 240)
Name: NF13862_high_28
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42636996 - 42636764
Alignment:
| Q |
1 |
tgatgtagaaacaccttctgatatgtgagggataattttgtatattatcagtcatattgaactttacatttatgtcatgttagcatcatagcatgtgttg |
100 |
Q |
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| T |
42636996 |
tgatgtagaaacaccttctgatatgtgtgggataattttgtatattatcagtcatattgaactttacatttatgtcatgttagcatcatagcatgtgttg |
42636897 |
T |
|
| Q |
101 |
ata--------ttataaatttactgtaacgctattattgttgtgaaatttgaagaaagcaatgttcattcatatgttcttatttcctgcgaaaatttatg |
192 |
Q |
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||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42636896 |
ataaatagtggttataattttactgcaacgctattattgttgtgaaatttgaacaaagcaatgttcattcatatgttcttatttcctgcgaaaatttacg |
42636797 |
T |
|
| Q |
193 |
aggactttggatctcaggtacaccctaaaacct |
225 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42636796 |
aggactttggatctcaggtacaccctaaaacct |
42636764 |
T |
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