View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13862_low_12 (Length: 391)

Name: NF13862_low_12
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13862_low_12
NF13862_low_12
[»] chr6 (3 HSPs)
chr6 (37-374)||(19816221-19816556)
chr6 (269-367)||(32690826-32690924)
chr6 (41-113)||(8208367-8208439)
[»] chr3 (2 HSPs)
chr3 (151-374)||(1203744-1203953)
chr3 (269-367)||(16074976-16075072)
[»] chr4 (3 HSPs)
chr4 (166-300)||(46512893-46513027)
chr4 (37-147)||(46512804-46512913)
chr4 (215-365)||(26759607-26759750)
[»] chr7 (1 HSPs)
chr7 (269-368)||(36850139-36850238)
[»] chr2 (1 HSPs)
chr2 (296-370)||(25197833-25197907)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 37 - 374
Target Start/End: Complemental strand, 19816556 - 19816221
Alignment:
Q  37 gtaagtgagcatcttaccgtctctttctcttacgaggtcgttcttcgacgtttttgctctgtgtgttgcagtgtcaatctcaaagataagtaagcatcaa 136  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| ||| ||||| ||   |||||||||||||||||||||||||||||||||||||||    
T  19816556 gtaagtgagcatcttgccgtctctttctcttacg--gtcgttctttgacattttttcttcatgtgttgcagtgtcaatctcaaagataagtaagcatcaa 19816459  T
Q  137 tcgcgcttcttcgacatttgaaggtaagttaagcatcactcacgcttcttacaacaaactcactcacgttcttctttctcttgtttcctccaggccgaga 236  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19816458 tgacgcttcttcgacatttgaaggtaagttaagcatcactcacgcttctcacaacaaactcactcacgttcttctttctcttatttcctccaggccgaga 19816359  T
Q  237 atcgccggatacccagaccaatggttcactcacactcacttcctccaccacgcaccagctcgttggaatcacttcctccaccagctcactcttcctctcg 336  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19816358 atcgctggatacccagaccagtggttcactcacgctcacttcctccaccacgcaccagcttgttggaatcacttcctccaccagctcactcttcctctcg 19816259  T
Q  337 cctcttgttatcaaataaggtaaggtaagccaatgtat 374  Q
    | |||| |||||||||||||||||||||||||||||||    
T  19816258 cttctttttatcaaataaggtaaggtaagccaatgtat 19816221  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 32690924 - 32690826
Alignment:
Q  269 cactcacttcctccaccacgcaccagctcgttggaatcacttcctccaccagctcactcttcctctcgcctcttgttatcaaataaggtaaggtaagcc 367  Q
    |||||||||||||||||| ||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32690924 cactcacttcctccaccaagcaccagctcgctgaaatcgcttcctccagcagctcactcttcctctcgcctcttgtcatcaaataaggtaaggtaagcc 32690826  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 8208439 - 8208367
Alignment:
Q  41 gtgagcatcttaccgtctctttctcttacgaggtcgttcttcgacgtttttgctctgtgtgttgcagtgtcaa 113  Q
    |||||||||||  |||||||||||||||||||||||||||||||| ||||||||  |||||||||||| ||||    
T  8208439 gtgagcatcttgtcgtctctttctcttacgaggtcgttcttcgacatttttgcttcgtgtgttgcagtctcaa 8208367  T

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Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 151 - 374
Target Start/End: Complemental strand, 1203953 - 1203744
Alignment:
Q  151 catttgaaggtaagttaagcatcactcacgcttcttacaacaaactcactcacgttcttctttctcttgtttcctccaggccgagaatcgccggataccc 250  Q
    ||||| ||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||      
T  1203953 cattttaaggtaagtca-gcatcactcacacttctcacaacaaactcactcacgttcttctttctcttatttcctccaggccgagaatcgctggatac-- 1203857  T
Q  251 agaccaatggttcactcacactcacttcctccaccacgcaccagctcgttggaatcacttcctccaccagctcactcttcctctcgcctcttgttatcaa 350  Q
               |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1203856 -----------tcactcacgctcacttcctccaccacgcaccagctcgttggaatcacttcctccaccagctcactcttcctctcgcttcttgttatcaa 1203768  T
Q  351 ataaggtaaggtaagccaatgtat 374  Q
    ||||||||||||||||||||||||    
T  1203767 ataaggtaaggtaagccaatgtat 1203744  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 16075072 - 16074976
Alignment:
Q  269 cactcacttcctccaccacgcaccagctcgttggaatcacttcctccaccagctcactcttcctctcgcctcttgttatcaaataaggtaaggtaagcc 367  Q
    |||||||||||||||||| |||||||||||  |||||||||||||| | ||||||||||||||||||||    ||| ||||| ||||||||||||||||    
T  16075072 cactcacttcctccaccaagcaccagctcgccggaatcacttcctctagcagctcactcttcctctcgc--agtgtcatcaagtaaggtaaggtaagcc 16074976  T

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Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 46512893 - 46513027
Alignment:
Q  166 taagcatcactcacgcttcttacaacaaactcactcacgttcttctttctcttgtttcctccaggccgagaatcgccggatacccagaccaatggttcac 265  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||    
T  46512893 taagcatcaatcacgcttcttacaacaaactcacacacgttcttctttctcttatttcctccaggccgagaatcgtcagatacccagaccagtggttcac 46512992  T
Q  266 tcacactcacttcctccaccacgcaccagctcgtt 300  Q
    |||| ||||||||||||||||||||||||||||||    
T  46512993 tcacgctcacttcctccaccacgcaccagctcgtt 46513027  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 46512804 - 46512913
Alignment:
Q  37 gtaagtgagcatcttaccgtctctttctcttacgaggtcgttcttcgacgtttttgctctgtgtgttgcagtgtcaatctcaaagataagtaagcatcaa 136  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  46512804 gtaagtgagcatcttgccgtctctttctcttacgaggtcgttcttcgacattttt-ctccgtgtgttgtagtgtcaatctcaaagataagtaagcatcaa 46512902  T
Q  137 tcgcgcttctt 147  Q
    || ||||||||    
T  46512903 tcacgcttctt 46512913  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 215 - 365
Target Start/End: Complemental strand, 26759750 - 26759607
Alignment:
Q  215 tcttgtttcctccaggccgagaatcgccggatacccagaccaatggttcactcacactcacttcctccaccacgcaccagctcgttggaatcacttcctc 314  Q
    |||| ||||||||||||||||||||||||||       |||  ||||||||| || |||||||| |||||||  ||| ||||||  ||| |||||| |||    
T  26759750 tcttctttcctccaggccgagaatcgccgga-------accggtggttcacttacgctcacttcatccaccattcacaagctcgccggagtcacttgctc 26759658  T
Q  315 caccagctcactcttcctctcgcctcttgttatcaaataaggtaaggtaag 365  Q
    ||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  26759657 cagaagctcactcttcctctcacctcttgttatcaaataaggtaaggtaag 26759607  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 269 - 368
Target Start/End: Original strand, 36850139 - 36850238
Alignment:
Q  269 cactcacttcctccaccacgcaccagctcgttggaatcacttcctccaccagctcactcttcctctcgcctcttgttatcaaataaggtaaggtaagcca 368  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36850139 cactcacttcctccaccaagcaccagctcgccggaatcacttcctccagcagctcactcttcctctcgcctcttgtcatcaaataaggtaaggtaagcca 36850238  T

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Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 25197833 - 25197907
Alignment:
Q  296 tcgttggaatcacttcctccaccagctcactcttcctctcgcctcttgttatcaaataaggtaaggtaagccaat 370  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25197833 tcgtcggaatcacttcctcaatcagctcactcttcctctcgcctcttgttattaaataaggtaaggtaagccaat 25197907  T

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