View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13862_low_13 (Length: 388)
Name: NF13862_low_13
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 6194206 - 6193963
Alignment:
| Q |
8 |
aatatgtaaatatggtacaattttatctatgaacctaagatgtttcaatctttcttattggaatatcaaaatgacaaacaaaa-gaaacacttgtaaaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
6194206 |
aatatgtaaatatggtacaattttatctatgaacctaaaatgtttcaatctttcttattggaatatcaaaatgaaaaacaaaaagaaacacttgtaaaag |
6194107 |
T |
|
| Q |
107 |
aataaattcgtctgaattctgttcataattaaaagaacatttgagatgaaattgactttgtccgaaatttcatctgaaaatggcaattttctagtaataa |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194106 |
aataaattcgtctgaattctgtccataattaaaagaacatttgagatgaaattgattttgtccgaaatttcatctgaaaatggcaattttctagtaataa |
6194007 |
T |
|
| Q |
207 |
atttgattcggaatccaactgaaaattcccctcttattattatt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6194006 |
atttgattcggaatccaactgaaaattcccctcttattattatt |
6193963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 6193914 - 6193798
Alignment:
| Q |
266 |
gataaagcctgtccaattgtattacacctccatgtatatttagttgtgcgaaccgtgtaactttagttctcgtgagcttaactcaattgataagacaatg |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
6193914 |
gataaagcctgtccaattgtattacacctccatgtatatttagttgtgctaaccgtgtaactttaatcctcgtgagcttaactcaattgataagacaatg |
6193815 |
T |
|
| Q |
366 |
cattaaatgtttaaggt |
382 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6193814 |
cattaaatgtttaaggt |
6193798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 36218276 - 36218239
Alignment:
| Q |
331 |
gttctcgtgagcttaactcaattgataagacaatgcat |
368 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
36218276 |
gttctcgtgagcttaactcaattgttaaaacaatgcat |
36218239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 359
Target Start/End: Complemental strand, 11318264 - 11318235
Alignment:
| Q |
330 |
agttctcgtgagcttaactcaattgataag |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11318264 |
agttctcgtgagcttaactcaattgataag |
11318235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 359
Target Start/End: Original strand, 31418112 - 31418141
Alignment:
| Q |
330 |
agttctcgtgagcttaactcaattgataag |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31418112 |
agttctcgtgagcttaactcaattgataag |
31418141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University