View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_14 (Length: 386)
Name: NF13862_low_14
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 3110261 - 3110098
Alignment:
| Q |
17 |
agtttttacttgaaaaccgattggcaagagaacaaatgggaatgaatggaagaaagaaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatt |
116 |
Q |
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| T |
3110261 |
agtttttacttgaaaaccgattggcaagagaacaaatgggaatgaatggaagaaagaaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatt |
3110162 |
T |
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| Q |
117 |
tgtagaggttcttgttacgtgcttg-aaagtaaataaataattgcttctcacttgtaattactc |
179 |
Q |
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| T |
3110161 |
tgtagaggttcttgttacgtgcttgtgaagtaaataaataattgcttctcacttgtaattactc |
3110098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 26271524 - 26271681
Alignment:
| Q |
17 |
agtttttacttgaaaaccgattggcaagagaacaaatgggaatgaatggaagaaagaaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatt |
116 |
Q |
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| T |
26271524 |
agtttttacttgaaaaccgattggcaagagaacaaatgggaatgtatggaagaaagaaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatt |
26271623 |
T |
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| Q |
117 |
tgtagaggttcttgttacgtgcttga-aagtaaataaataattgcttctcacttgtaa |
173 |
Q |
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| T |
26271624 |
tgtagaggttcttgttaggtgcatgagaatcaaataaataattgattctcacttgtaa |
26271681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 44065058 - 44065123
Alignment:
| Q |
73 |
aaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatttgtagaggttcttgttacgtgc |
138 |
Q |
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| T |
44065058 |
aaggtggagaggatgtatttgaagcaacacatgtataagaaatttgttgaggttattgttaggtgc |
44065123 |
T |
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