View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13862_low_15 (Length: 385)
Name: NF13862_low_15
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 12031018 - 12031387
Alignment:
| Q |
18 |
tttaaaaacctaattgtaaataaattgatgcgttctcggacacaactcctctaaaattttatttnnnnnnnnnnnnnnnnttcatgtttgaaatatcaaa |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
12031018 |
tttaaaaaccttattgtaaataaattgatgcgttctcggacacaactcctctaaaattttatttaaaataaaaataaaaattcatgtgtgaaatatcaaa |
12031117 |
T |
|
| Q |
118 |
tgatgtttgatttattgattaattaccacgtaaagtatatcattgattatggatgcgatattctactcggccgctcgctactaaacaaaaactttcattt |
217 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12031118 |
tgttgtttgatttattgattaattaacccgtaaagtatatcattgattatggatgcaatattctactcggccgctcgctactaaacaaaaactttcattt |
12031217 |
T |
|
| Q |
218 |
tatcgaaattgtgaatctggacataacaaaatgttcatagacacatatccgcacggacaaaatttag----acataattttagattatacttctaaactc |
313 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||||||||| |
|
|
| T |
12031218 |
tatcgaaattgtgaatctcgacataacaaaatgttcatagacacatatccgcacggacaagatttagacgtacgtatttttagattatacttctaaactc |
12031317 |
T |
|
| Q |
314 |
atgtcgaggacggagaaagagtcgaatagtgtacctaagtagaccttgacagcttgcatataagaataat |
383 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12031318 |
atgtcgaggacggagaaagagtcgaagagtgtacctaagtagaccttgacagcttgcatataagaataat |
12031387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University