View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_16 (Length: 369)
Name: NF13862_low_16
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_16 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 183528 - 183876
Alignment:
| Q |
15 |
aatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttcg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183528 |
aatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttcg |
183627 |
T |
|
| Q |
115 |
gggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183628 |
gggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaa |
183727 |
T |
|
| Q |
215 |
cgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183728 |
cgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgc |
183827 |
T |
|
| Q |
315 |
actctttcaagggtggctgcttctaggcaaacctcctggctgtctctgc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183828 |
actctttcaagggtggctgcttctaggcaaacctcctggctgtctctgc |
183876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 493988 - 493640
Alignment:
| Q |
15 |
aatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttcg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493988 |
aatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttcg |
493889 |
T |
|
| Q |
115 |
gggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493888 |
gggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaa |
493789 |
T |
|
| Q |
215 |
cgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
493788 |
cgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgc |
493689 |
T |
|
| Q |
315 |
actctttcaagggtggctgcttctaggcaaacctcctggctgtctctgc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493688 |
actctttcaagggtggctgcttctaggcaaacctcctggctgtctctgc |
493640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 18191649 - 18191301
Alignment:
| Q |
15 |
aatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttcg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191649 |
aatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttcg |
18191550 |
T |
|
| Q |
115 |
gggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18191549 |
gggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaa |
18191450 |
T |
|
| Q |
215 |
cgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18191449 |
cgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgc |
18191350 |
T |
|
| Q |
315 |
actctttcaagggtggctgcttctaggcaaacctcctggctgtctctgc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191349 |
actctttcaagggtggctgcttctaggcaaacctcctggctgtctctgc |
18191301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 34658987 - 34658639
Alignment:
| Q |
15 |
aatattcacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgcggaggaacccttaggttttcg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34658987 |
aatattcacctgttgtccatcgactacgccattcggcctgatcttaggccctgactcaccctctgtggacgaaccttgcggaggaacccttaggttttcg |
34658888 |
T |
|
| Q |
115 |
gggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
34658887 |
gggcattggattctcaccaatgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaacctgctcgcgcgggtacttcgttctaaggcggaa |
34658788 |
T |
|
| Q |
215 |
cgctcccctaccgattcatttttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgc |
314 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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|
| T |
34658787 |
ctctcccctaccgattcatttttagatcccacagctttggcagatcgcttagccccgttcatcttcggcgcgagagcgctcgatcagtgagctattatgc |
34658688 |
T |
|
| Q |
315 |
actctttcaagggtggctgcttctaggcaaacctcctggctgtctctgc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658687 |
actctttcaagggtggctgcttctaggcaaacctcctggctgtctctgc |
34658639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 45610224 - 45610261
Alignment:
| Q |
15 |
aatattcacctgttgtccatcgactacgcctttcggcc |
52 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
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|
| T |
45610224 |
aatattcacctgttgtgaatcgactacgcctttcggcc |
45610261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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