View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_19 (Length: 337)
Name: NF13862_low_19
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 30946611 - 30946316
Alignment:
| Q |
15 |
ctgcatacaaaacaccacttgcaatatctgaattacaacaaaaagccttgttggcttgaaagaaacttaacatggacttgcaaataattgggagtcgcag |
114 |
Q |
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| T |
30946611 |
ctgcatacaaaacaccacttggaatatctgaattacaacaaaaacccttgttggcttgaaagaaacttaacatggacttgcaaataattgggagtcgcaa |
30946512 |
T |
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| Q |
115 |
aatgctgcaactccatgaattagaagaaaatagtcttattacttgtgaaaatgcagaagttacaagtccaaggttaataaatggcatgatgccaatattc |
214 |
Q |
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| T |
30946511 |
aatgctgcaactccatgaattagaagaaaatagtcttattacttatgaaaatgcagaagttacaagtccaaggttaataaatggcatgatgccaatattc |
30946412 |
T |
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| Q |
215 |
nnnnnnnggaattccaagtaggggagaaagtcttactctgtaactccaaactaa-----------agaaaattaaattcaagatggtttagacctt |
299 |
Q |
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| T |
30946411 |
aaaaaaaggaattccaagtaggggagaaagtcttactctgtaactccaaactaaagctatttcctagaaaattaaattcaagatggtttagacctt |
30946316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 42 - 319
Target Start/End: Complemental strand, 30952489 - 30952201
Alignment:
| Q |
42 |
ctgaattacaacaaaaagccttgttggcttgaaagaaacttaacatggacttgcaaataattgggagtcgcagaatgctgcaactccatgaattagaaga |
141 |
Q |
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| T |
30952489 |
ctgaatcacaacacaaagccttgttggctctaaagaaacttaacttggacttgcaaaatactaggagtctcgaaatgctgcaactccataaattagaaga |
30952390 |
T |
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| Q |
142 |
aaatagtcttattacttgtgaaaatgcagaagtt-acaagtccaaggttaataaatggcatgatgccaatattcnnnnnnnggaattccaagtaggggag |
240 |
Q |
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| T |
30952389 |
aaatagtcttattacttat-aaaatttagaagtttacaagtccaaggttaggaaatggcatgatgccaagattcgaaaaaaggaattccaagtgggggag |
30952291 |
T |
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| Q |
241 |
aaagtcttactctgtaactccaaactaa-----------agaaaattaaattcaagatggtttagaccttgtgtgatttcttaagtcttc |
319 |
Q |
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| T |
30952290 |
aaagtcttactctgtaactccaaactaaacctatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttctcaagtcttc |
30952201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 13208438 - 13208305
Alignment:
| Q |
73 |
aaagaaacttaacatggacttgcaaataattgggagtcgcagaatgctgcaactccatgaattagaagaaaatagtcttattacttgtgaaaatgca-ga |
171 |
Q |
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| T |
13208438 |
aaagaaacttaaattggacttgcaaaaagttggttcttgtagaatgatgcaactccatgagttagaagagcatagacttattacttaggagaatgcacaa |
13208339 |
T |
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| Q |
172 |
agttacaagtccaaggttaataaatggcatgatg |
205 |
Q |
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| T |
13208338 |
atttaaaagtccaaagttaagaaatgacatgatg |
13208305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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