View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_20 (Length: 337)
Name: NF13862_low_20
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 46 - 315
Target Start/End: Original strand, 55695428 - 55695694
Alignment:
| Q |
46 |
ctacttttttcacatgtcaaagttgatgagaagcttttccgctttatttgtttggtttcttttgtcattgatcttattgtgaaggtaagtctatgggtat |
145 |
Q |
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| T |
55695428 |
ctacttttttcacatgtcaaagttgatgagaagcttttctgctttatttgtttggcttcttttgtcattgatcttattgtgaaggta---ctatgggtat |
55695524 |
T |
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| Q |
146 |
ggctttacggatttattattatataaggagctatagccactgaagcttgtttggtcattatgtatttctcctggtttgaataaattatannnnnnnnnnn |
245 |
Q |
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| T |
55695525 |
ggctttacggatttattattatataaggagctatagccactgaagcttgtttggtcattatgtatttctcctggtttgaataaattatattttacttttt |
55695624 |
T |
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| Q |
246 |
nnnnnngccgaaactctatcataatttacccacaggatttcagaaagaggggaagagtgcaccacaagat |
315 |
Q |
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| T |
55695625 |
tattttgccaaaactctatcataatttactcacaggatttcagaaagaggggaagagtgcaccacaagat |
55695694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 35804319 - 35804198
Alignment:
| Q |
51 |
tttttcacatgtcaaagttgatgagaagcttttccgctttatttgtttggtttc---ttttgtcattgatcttattgtgaaggtaagtctatgggtatgg |
147 |
Q |
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| T |
35804319 |
tttttcacaagtcaaagttgatgagaagcttttctattttatttgtttggttttgttttttttcattgatcttattttgaaggtaagtctttgggtatgg |
35804220 |
T |
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| Q |
148 |
ctttacggatttattattatat |
169 |
Q |
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| T |
35804219 |
ctttacagaattattattatat |
35804198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 35804064 - 35804006
Alignment:
| Q |
255 |
gaaactctatcataatttacccacaggatttcagaaagaggggaagagtgcaccacaaga |
314 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |
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| T |
35804064 |
gaaagtctatcataatttacccaaaggatttcagaaaga-gggaggagtgcaccacaaga |
35804006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 35804127 - 35804087
Alignment:
| Q |
194 |
gtttggtcattatgtatttctcctggtttgaataaattata |
234 |
Q |
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| T |
35804127 |
gtttggtcattatgtatttcttctggtttgaataaattata |
35804087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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