View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_23 (Length: 320)
Name: NF13862_low_23
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29709376 - 29709592
Alignment:
| Q |
1 |
tagatggtatgttgctaattccaaggttgatcatatcataacaaagatggagaatttgcatggtgatattttgcctgcttcctctatgtatgaaaagcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29709376 |
tagatggtatgttgctaattccaaggttgatcatatcataacaaagatggagaatttgcatggtgatattttgcctgcttcctctatgtatgaaaagcta |
29709475 |
T |
|
| Q |
101 |
gtattttattgcagtgctgccgcgaataaggtataattttctcctttattcattctcatattacggttatccatgagaaggaaaacgataacaggacgtt |
200 |
Q |
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||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29709476 |
gtattgtattgcagtgccaccgcgaataagatataattttgtcctttattcattctcatattacggttatccatgagaaggaaaacgataacaggacgtt |
29709575 |
T |
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| Q |
201 |
tgctcccttcatatcga |
217 |
Q |
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||||||||||||||||| |
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| T |
29709576 |
tgctcccttcatatcga |
29709592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 55809593 - 55809377
Alignment:
| Q |
1 |
tagatggtatgttgctaattccaaggttgatcatatcataacaaagatggagaatttgcatggtgatattttgcctgcttcctctatgtatgaaaagcta |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
55809593 |
tagatggtatgttgctaatttcaaggttgatcatatcataagaaagatggagaatttgcatggtgaaattttgcatgcttcctctatgtatgaaaagcta |
55809494 |
T |
|
| Q |
101 |
gtattttattgcagtgctgccgcgaataaggtataattttctcctttattcattctcatattacggttatccatgagaaggaaaacgataacaggacgtt |
200 |
Q |
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| T |
55809493 |
gtattgtattgcagtgccaccgcgaataagatataattttgtcctttattcattctcatattacggttatccatgagaaggaaaacgataacaggacgtt |
55809394 |
T |
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| Q |
201 |
tgctcccttcatatcga |
217 |
Q |
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| T |
55809393 |
tgctcccttcatatcga |
55809377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 55806269 - 55806058
Alignment:
| Q |
1 |
tagatggtatgttgctaattccaaggttgatcatatcataacaaagatggagaatttgcatggtgatattttgcctgcttcctctatgtatgaaaagcta |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
55806269 |
tagatggtatgttgctaattttaaggttgatcatatcataagaaagatggagaatttgactggtgaaattttgcctgcttcctctatgtatgaaaagcta |
55806170 |
T |
|
| Q |
101 |
gtattttattgcagtgctgccgcgaataaggtataattttctcctttattcattctcatattacggttatccatgagaaggaaaacgataacaggacgtt |
200 |
Q |
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| T |
55806169 |
gtattgtattacattgccactgtggataaggtataattttgtcctttattcattctcatattacggttatccatgag-----aaacgataataggacgtt |
55806075 |
T |
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| Q |
201 |
tgctcccttcatatcga |
217 |
Q |
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||||||||||||||||| |
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| T |
55806074 |
tgctcccttcatatcga |
55806058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 15172992 - 15173162
Alignment:
| Q |
4 |
atggtatgttgctaattccaaggttgatcatatcataacaaagatggagaatttgcatggtg------atattttgcctgcttcctctatgtatgaaaag |
97 |
Q |
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||||| ||||| ||||| ||||||||| |||||||||| |||||| |||||||||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
15172992 |
atggtttgttggtaatttcaaggttgagcatatcataaaaaagattgagaatttgcatggtgtgttggaaattttgcctgcgtcctctatgtatgaaaag |
15173091 |
T |
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| Q |
98 |
ctagtattttattgcagtgctgccgcgaataaggtataattttctcctttattcattctcatattacggttatc |
171 |
Q |
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| T |
15173092 |
ctaattttgtattgctgtgg---caaggacaaggtataattttctcctttattcattctcataatacggttatc |
15173162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 15168263 - 15168356
Alignment:
| Q |
4 |
atggtatgttgctaattccaaggttgatcatatcataacaaagatggagaatttgcatggtgatattttgcctgcttcctctatgtatgaaaagcta |
100 |
Q |
| |
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||||| ||||| ||||| ||||||||| ||||||||| |||||| |||||||||||||||| | |||||||| ||||||||||||||||||||| |
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| T |
15168263 |
atggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggtg---tgttgcctgcgtcctctatgtatgaaaagcta |
15168356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 15173188 - 15173234
Alignment:
| Q |
169 |
atccatgagaaggaaaacgataacaggacgtttgctcccttcatatc |
215 |
Q |
| |
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||||||||||||||||||||||||| || | ||||||||| |||||| |
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| T |
15173188 |
atccatgagaaggaaaacgataacaagatggttgctccctccatatc |
15173234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 1523360 - 1523403
Alignment:
| Q |
128 |
aaggtataattttctcctttattcattctcatattacggttatc |
171 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1523360 |
aaggtataattttctcctttattcattctcatattatggttatc |
1523403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 8492973 - 8492930
Alignment:
| Q |
128 |
aaggtataattttctcctttattcattctcatattacggttatc |
171 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8492973 |
aaggtataattttctcctttattcattctcatattatggttatc |
8492930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 8519546 - 8519503
Alignment:
| Q |
128 |
aaggtataattttctcctttattcattctcatattacggttatc |
171 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8519546 |
aaggtataattttctcctttattcattctcatattatggttatc |
8519503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 1523431 - 1523471
Alignment:
| Q |
169 |
atccatgagaaggaaaacgataacaggacgtttgctccctt |
209 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||| |
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| T |
1523431 |
atccatgagaaggaaaactataacaagacgtttgctccctt |
1523471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 8492899 - 8492863
Alignment:
| Q |
173 |
atgagaaggaaaacgataacaggacgtttgctccctt |
209 |
Q |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
8492899 |
atgagaaggaaaacgataacaagacgtttgctccctt |
8492863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 8519472 - 8519436
Alignment:
| Q |
173 |
atgagaaggaaaacgataacaggacgtttgctccctt |
209 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
8519472 |
atgagaaggaaaacgataacaagacgtttgctccctt |
8519436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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