View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_24 (Length: 304)
Name: NF13862_low_24
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 22891973 - 22892252
Alignment:
| Q |
10 |
tacagtaacaaatcttagtttgttcttattatgaaaatataaaatcttaattttgttttcttttgggaatcagtatgtttgtaggaagacattggcagac |
109 |
Q |
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| T |
22891973 |
tacagtaacaaatcttagtttgttcttattatgaaaatataaaaccttaattttgttttcttttgggaatcagtatgtttgtaggaagacattggcagac |
22892072 |
T |
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| Q |
110 |
agtaggccacgtattagagggagatttgctaagaatgatgaaattgtaaggaatccaccaaatcaatggagccatattagtaatggagaagaactggaag |
209 |
Q |
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| T |
22892073 |
agtaggccacgtattagagggagatttgctaagaatgatgaaattgtaaggaatccaccaaatcaatggagccatattagtaatggagaagaattggaag |
22892172 |
T |
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| Q |
210 |
atgaggaagaagaaaattgggacagtttatttgattcattggttcctacttcaaatcttgctcatgagcagcatcatagt |
289 |
Q |
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| T |
22892173 |
atgaggaagaagaaaattgggacagtttatttgattcattggttcctacttcaaatcttgctcctgaggagcatcatagt |
22892252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 22943637 - 22943916
Alignment:
| Q |
10 |
tacagtaacaaatcttagtttgttcttattatgaaaatataaaatcttaattttgttttcttttgggaatcagtatgtttgtaggaagacattggcagac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22943637 |
tacagtaacaaatcttagtttgttcttattatgaaaatataaaaccttaattttgttttcttttgggaatcagtatgtttgtaggaagacattggcagac |
22943736 |
T |
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| Q |
110 |
agtaggccacgtattagagggagatttgctaagaatgatgaaattgtaaggaatccaccaaatcaatggagccatattagtaatggagaagaactggaag |
209 |
Q |
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| T |
22943737 |
agtaggccacgtattagagggagatttgctaagaatgatgaaattgtaaggaatccaccaaatcaatggagccatattagtaatggagaagaattggaag |
22943836 |
T |
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| Q |
210 |
atgaggaagaagaaaattgggacagtttatttgattcattggttcctacttcaaatcttgctcatgagcagcatcatagt |
289 |
Q |
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| T |
22943837 |
atgaggaagaagaaaattgggacagtttatttgattcattggttcctacttcaaatcttgctcctgaggagcatcatagt |
22943916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 41012862 - 41012952
Alignment:
| Q |
65 |
ttttcttttgggaatcagtatgtttgtaggaagacattggcagacagtaggccacgtattagagggagatttgctaagaatgatgaaattg |
155 |
Q |
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| T |
41012862 |
ttttcttttctgaatcagtatgtttgccgaaagacattggcagataggaggccacgaatcagaggacggtttgcgaggaatgatgaaattg |
41012952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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