View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_25 (Length: 295)
Name: NF13862_low_25
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 32576367 - 32576094
Alignment:
| Q |
18 |
acaagtggcttggctttggtggtaccaccatgtgattcataaaggtcgatgctagaatgacctggtggcacactccaggtgaaggcatgaagcatcctcg |
117 |
Q |
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| T |
32576367 |
acaagtggcttggctttggtggtaccaccatgtgattcaaaaaggtcgatgctagaatgacctggtggcacactccagatgaaggcatgaagcatcctcg |
32576268 |
T |
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| Q |
118 |
caaataacattaaagtcatcgaagttctaaggaggagttcgggacacccacgtcttcatgtgctaaacgttatcgcatttaaagttgtatatcccaaatc |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| |
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| T |
32576267 |
caaataacattaaagtcatcgaaattctaaggaggagttcgggacacccacgtcttcatgtgctaaacgttatcacatttaaagttggatattccaaatc |
32576168 |
T |
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| Q |
218 |
caagttagaaccattagtcttattaagatgtctgtctggtttaaatttaagtggttctgtccagattctcggat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32576167 |
caagttagaaccattagtcttattaagatgtctgtcaggtttaaatttaagtggttctgtccagattctcggat |
32576094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 31932211 - 31931942
Alignment:
| Q |
18 |
acaagtggcttggctttggtggtaccaccatgtgattcataaaggtcgatgctagaatgacctggtggcacactccaggtgaaggcatgaagcatcctcg |
117 |
Q |
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|||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |
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| T |
31932211 |
acaagtggcttgactttcgtggtaccaccatgtgattcagaaaggtcgatgctagaatatccgggtggcatgctccaggtgaaggcatgaagcatcctcg |
31932112 |
T |
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| Q |
118 |
caaataacattaaagtcatcgaagttctaaggaggagttcgggacacccacgtcttcatgtgctaaacgttatcgcatttaaagttgtatatcccaaatc |
217 |
Q |
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| T |
31932111 |
caaataacattaacgtcatcgaagtcccaaggacgagcccagaagacccacgtc-tcctatgctaaacattaccacatttaaagttggatatcccaaatt |
31932013 |
T |
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| Q |
218 |
caagttagaaccattagtcttattaagatgtctgtctggtttaaatttaagtggttctgtccagattctcggat |
291 |
Q |
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||||| |||||||||||| |||| |||||| | ||||||||||| ||||||| |||||| ||||| |||| |
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| T |
31932012 |
taagttcgaaccattagtc---ttaaaatgtctttttggtttaaattcaagtggtcttgtccatattcttggat |
31931942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 31930975 - 31930863
Alignment:
| Q |
37 |
tggtaccaccatgtgattcataaaggtcgatgctagaa--tgacctggtggcacactccaggtgaaggcatgaagcatcctcgcaaataacattaaagtc |
134 |
Q |
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||||| || ||||||||||| ||||||||||||||||| | ||| |||| ||||||||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
31930975 |
tggtatcaacatgtgattcagaaaggtcgatgctagaaaataaccgggtgacacactccaaatgaaggcatgaagcatcgttgcaaataacattaaagtc |
31930876 |
T |
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| Q |
135 |
atcgaagttctaa |
147 |
Q |
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| |||||| |||| |
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| T |
31930875 |
accgaagtcctaa |
31930863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 31274441 - 31274567
Alignment:
| Q |
18 |
acaagtggcttggctttggtggtaccaccatgtgattcataaaggtcgatgctagaatgacctggtggcacactccaggtgaaggcatgaagcatcctcg |
117 |
Q |
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||||||||||| ||||| ||||| || ||||| |||||| | ||||| || |||| ||| |||||||| |||||| ||||| |||| | || ||| | |
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| T |
31274441 |
acaagtggcttagcttttgtggttcctccatgagattcagagaggtcaatattagactgatttggtggcaaactccacgtgaaaccatggatcaaccttg |
31274540 |
T |
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| Q |
118 |
caaataacattaaagtcatcgaagttc |
144 |
Q |
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|||||||||| | |||||| ||||||| |
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| T |
31274541 |
caaataacataatagtcattgaagttc |
31274567 |
T |
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