View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13862_low_3 (Length: 598)

Name: NF13862_low_3
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13862_low_3
NF13862_low_3
[»] chr6 (5 HSPs)
chr6 (5-347)||(23111906-23112257)
chr6 (418-583)||(23117471-23117636)
chr6 (462-537)||(23110787-23110862)
chr6 (487-578)||(1149008-1149100)
chr6 (542-574)||(26184672-26184704)
[»] chr4 (13 HSPs)
chr4 (114-252)||(2737705-2737843)
chr4 (263-347)||(56331301-56331385)
chr4 (114-252)||(38372638-38372776)
chr4 (118-215)||(39264727-39264824)
chr4 (118-252)||(45065539-45065668)
chr4 (114-224)||(48997040-48997150)
chr4 (473-580)||(53449249-53449357)
chr4 (460-506)||(53449348-53449394)
chr4 (222-252)||(39264677-39264707)
chr4 (460-498)||(46557234-46557272)
chr4 (126-179)||(16041404-16041457)
chr4 (461-502)||(43176608-43176649)
chr4 (126-194)||(40140517-40140585)
[»] chr1 (2 HSPs)
chr1 (120-252)||(3324887-3325019)
chr1 (131-216)||(48315107-48315192)
[»] chr2 (3 HSPs)
chr2 (118-248)||(23757669-23757799)
chr2 (158-252)||(12197381-12197478)
chr2 (126-181)||(33522369-33522424)
[»] chr8 (5 HSPs)
chr8 (114-218)||(28733215-28733319)
chr8 (167-252)||(10227321-10227406)
chr8 (145-224)||(10227250-10227328)
chr8 (126-224)||(42476517-42476615)
chr8 (476-573)||(44890294-44890392)
[»] chr5 (4 HSPs)
chr5 (114-224)||(37344564-37344674)
chr5 (461-578)||(13580531-13580649)
chr5 (461-578)||(13590617-13590735)
chr5 (480-578)||(13588646-13588745)
[»] chr3 (8 HSPs)
chr3 (135-211)||(50301850-50301926)
chr3 (461-581)||(22935403-22935524)
chr3 (126-215)||(32862061-32862150)
chr3 (471-536)||(27297614-27297679)
chr3 (131-210)||(10773480-10773559)
chr3 (212-252)||(25638461-25638501)
chr3 (126-224)||(4317461-4317559)
chr3 (467-504)||(48343365-48343402)
[»] chr7 (1 HSPs)
chr7 (478-578)||(4879918-4880020)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 347
Target Start/End: Original strand, 23111906 - 23112257
Alignment:
Q  5 agtgagatgaatacgaaagagcatacctttagagccataagtatgga--------------gtgttcgcctatcatctcacaatgctaagtacctacagc 90  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||              |||||||||||||||||||||| ||||||||||||||||    
T  23111906 agtgacatgaatacgtaagagcatacctttagagccataagtatggactttcttacatggagtgttcgcctatcatctcacaaggctaagtacctacagc 23112005  T
Q  91 aagccgaagaacatataaccaatgttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaat 190  Q
    ||||||||||||||||||||||||    ||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23112006 aagccgaagaacatataaccaatg----gttcggtt--cggttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaat 23112099  T
Q  191 ggtttaattaattttcgtttggttcggtccggttcagtttttggatatttttgcccacccct-nnnnnnncttacttaatgcaaatattgtgcggtgctt 289  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||| ||||||    
T  23112100 ggtttaattaattttcgtttggttcggttcggttcagtttttggatatttttgcccacctctaaataaaacttacttaatgcaaatattgtgcagtgctt 23112199  T
Q  290 gaatgaatgattctgaacagcctagatgcatcaaagaagttcaaaactaactggtata 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  23112200 gaatgaatgattctgaacagcctagatgcatcaaagaagttcaaaagtaactagtata 23112257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 418 - 583
Target Start/End: Original strand, 23117471 - 23117636
Alignment:
Q  418 ctataagaataacaaagaaatttccgaggtttatatgctgttaaatttcaggtttgaagctccgcggtagttaactgccgaagttccgcaagagttaact 517  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||| |    
T  23117471 ctatcagaataacaaagaaatttcagaggtttatacgctgttaaatttcaggtttgaaggtccacggtagttaactgccgaagttccgcgggagttaatt 23117570  T
Q  518 accaccggttaacttccgcgataattaactgcaaaggggtatttcggtattttactggtgtttctt 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23117571 accaccggttaacttccgcgataattaactgcaaaggggtatttcggtattttaccggtgtttctt 23117636  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 462 - 537
Target Start/End: Complemental strand, 23110862 - 23110787
Alignment:
Q  462 atttcaggtttgaagctccgcggtagttaactgccgaagttccgcaagagttaactaccaccggttaacttccgcg 537  Q
    |||| |||||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||||||    
T  23110862 attttaggtttgaagctccgcggtagttaactgccgaagttccgtggtagttaactaccgccggttaacttccgcg 23110787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 578
Target Start/End: Original strand, 1149008 - 1149100
Alignment:
Q  487 gttaactgccgaagttccgcaagagttaactaccaccggttaacttccgcgataattaactg-caaaggggtatttcggtattttactggtgt 578  Q
    ||||||||||||||||||||   ||||||||| | ||||||||||||| | ||| |||| || | ||||| |||||||||  |||||||||||    
T  1149008 gttaactgccgaagttccgcggtagttaactatcgccggttaacttccacaatagttaattgtcgaagggatatttcggtgctttactggtgt 1149100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 574
Target Start/End: Original strand, 26184672 - 26184704
Alignment:
Q  542 ttaactgcaaaggggtatttcggtattttactg 574  Q
    |||||||||||||||||||| ||||||||||||    
T  26184672 ttaactgcaaaggggtattttggtattttactg 26184704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 114 - 252
Target Start/End: Original strand, 2737705 - 2737843
Alignment:
Q  114 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 213  Q
    |||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||  ||||||    
T  2737705 gttcggttcggttaaccgttcggttcagttaatgatttgtttttaaaataacggttcggttcaataaccaatgtaatggttcagttaattttaatttggt 2737804  T
Q  214 tcggtccggttcagtttttggatatttttgcccacccct 252  Q
    ||||| ||||||||||||| ||||||||| |||||||||    
T  2737805 tcggttcggttcagtttttagatatttttacccacccct 2737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 263 - 347
Target Start/End: Complemental strand, 56331385 - 56331301
Alignment:
Q  263 acttaatgcaaatattgtgcggtgcttgaatgaatgattctgaacagcctagatgcatcaaagaagttcaaaactaactggtata 347  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  56331385 acttaatgcaaatattgtgcagtgcttgaatgaatgattctgaacagcctagatgcatcaaagaagttcaaaactagcaggtata 56331301  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 114 - 252
Target Start/End: Original strand, 38372638 - 38372776
Alignment:
Q  114 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 213  Q
    |||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||| ||| | |||||||| |||| ||    
T  38372638 gttcggttcggttaaccgctcggttcagttaatgaactgtttttaaaataactgttcggttcaataaccaatgcaatagttcagttaattttagtttagt 38372737  T
Q  214 tcggtccggttcagtttttggatatttttgcccacccct 252  Q
    ||||| || |||  |||||  ||||||||||||||||||    
T  38372738 tcggttcgattcgatttttaaatatttttgcccacccct 38372776  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 39264824 - 39264727
Alignment:
Q  118 ggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttc 215  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||   |||||||| |||||||||    
T  39264824 ggttcggttaaccgttcggttcagttaatgaactgtttttaaaataatggttcagttcaataaccaatgtaatggttcggttaattttagtttggttc 39264727  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 118 - 252
Target Start/End: Complemental strand, 45065668 - 45065539
Alignment:
Q  118 ggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcgg 217  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||  ||| ||||||||||| ||||||| || |  ||||||| ||||||||       
T  45065668 ggttcggttaaccgttcgattcagttaatgaactgtttttaaaataacgactcgattcaataaccaatgtaatgattcagctaattttagtttggtt--- 45065572  T
Q  218 tccggttcagtttttggatatttttgcccacccct 252  Q
      |||||| ||||||||||||||||||||| ||||    
T  45065571 --cggttcggtttttggatatttttgcccatccct 45065539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 48997040 - 48997150
Alignment:
Q  114 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 213  Q
    ||||||||  |||||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||| |||| |||||   ||||||||  ||||||    
T  48997040 gttcggttcagttaaccgttcgattcagttaatgaactgtttttaaaataacggtttggtttaataaccaatgtagtggttcggttaattttaatttggt 48997139  T
Q  214 tcggtccggtt 224  Q
    || || |||||    
T  48997140 tcagttcggtt 48997150  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 580
Target Start/End: Complemental strand, 53449357 - 53449249
Alignment:
Q  473 gaagctccgcggtagttaactgccgaagttccgcaagagttaactaccaccggttaacttccgcgataattaact-gcaaaggggtatttcggtatttta 571  Q
    |||| ||||||| |||||||||||||||||||||   |||||||| || || |||||||||||||  | ||||||  | | | |||||||||||||||||    
T  53449357 gaagttccgcggaagttaactgccgaagttccgcggcagttaacttcctccagttaacttccgcggcagttaactatcgaggaggtatttcggtatttta 53449258  T
Q  572 ctggtgttt 580  Q
    ||| |||||    
T  53449257 ctgatgttt 53449249  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 506
Target Start/End: Complemental strand, 53449394 - 53449348
Alignment:
Q  460 aaatttcaggtttgaagctccgcggtagttaactgccgaagttccgc 506  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  53449394 aaatttcaggtttgaagctccgcagtagttaactagcgaagttccgc 53449348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 39264707 - 39264677
Alignment:
Q  222 gttcagtttttggatatttttgcccacccct 252  Q
    |||||||||||||||||||||||||||||||    
T  39264707 gttcagtttttggatatttttgcccacccct 39264677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 498
Target Start/End: Original strand, 46557234 - 46557272
Alignment:
Q  460 aaatttcaggtttgaagctccgcggtagttaactgccga 498  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  46557234 aaatttcaggtttgaagctccgcggcaattaactgccga 46557272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 16041457 - 16041404
Alignment:
Q  126 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaata 179  Q
    |||| |||||||||| |||||||||||| || |||||| |||||| ||||||||    
T  16041457 taacggttcggttcagttaatgaactgtcttcaaaatagcggttcagttcaata 16041404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 502
Target Start/End: Original strand, 43176608 - 43176649
Alignment:
Q  461 aatttcaggtttgaagctccgcggtagttaactgccgaagtt 502  Q
    |||||||||||||||  ||| |||||||||||||||||||||    
T  43176608 aatttcaggtttgaaattcctcggtagttaactgccgaagtt 43176649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 40140585 - 40140517
Alignment:
Q  126 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtt 194  Q
    |||| |||||||||| |||||||||||| || |||||| |||||| ||||| || ||||| ||| ||||    
T  40140585 taacggttcggttcagttaatgaactgtcttcaaaatagcggttcagttcattatccactataaaggtt 40140517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 3324887 - 3325019
Alignment:
Q  120 tttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtc 219  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||| | |||||||| ||||||||| ||     
T  3324887 tttggttaaccgtttggttcagttaatgaattgtttttaaaataacggttcggtttaataaccaatgtaatggttcagttaattttagtttggttcagtt 3324986  T
Q  220 cggttcagtttttggatatttttgcccacccct 252  Q
    ||||||| |||||||||||||||||||||||||    
T  3324987 cggttcaatttttggatatttttgcccacccct 3325019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 48315107 - 48315192
Alignment:
Q  131 gttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcg 216  Q
    |||||||||| |||||||||||||||||||||||| ||||| || ||||| || |||||||||| | |||||||| ||||||||||    
T  48315107 gttcggttcagttaatgaactgtttttaaaataactgttcgatttaataatcaatgtaatggttcagttaattttagtttggttcg 48315192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 23757799 - 23757669
Alignment:
Q  118 ggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcgg 217  Q
    ||||| ||||||||||||||||| ||||| || |||| |||||||||||| ||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  23757799 ggtttagttaaccgttcggttcagttaataaattgttcttaaaataacggatcggttcaataaccaatgtaatggttcaattaattttagtttggttcgg 23757700  T
Q  218 tccggttcagtttttggatatttttgcccac 248  Q
    | ||||||||||||| |||||||||| ||||    
T  23757699 ttcggttcagttttttgatatttttgtccac 23757669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 12197478 - 12197381
Alignment:
Q  158 aaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggtt---cggtccggttcagtttttggatatttttgcccacccct 252  Q
    |||||||||||||||||||||||||| ||||||||||   |||||||| ||| ||||   | || |||||| |||||||| ||||||||| |||||||    
T  12197478 aaaataacggttcggttcaataaccagtgtaatggttcggttaattttggttcggtttggccgttcggttcggtttttggttatttttgctcacccct 12197381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 33522424 - 33522369
Alignment:
Q  126 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataac 181  Q
    |||||||| |||| | ||| |||| |||||||||||||||||||| ||||||||||    
T  33522424 taaccgtttggtttagttagtgaattgtttttaaaataacggttcagttcaataac 33522369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 28733319 - 28733215
Alignment:
Q  114 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 213  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||| || | |||||||| |||| ||    
T  28733319 gttcggtttggttaaccgtttggttcagttaatgaactgtttttaaaataacggttctgtttaataaccaatgtaatgattcagttaattttagtttagt 28733220  T
Q  214 tcggt 218  Q
    |||||    
T  28733219 tcggt 28733215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 10227321 - 10227406
Alignment:
Q  167 gttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtccggttcagtttttggatatttttgcccacccct 252  Q
    |||||||| |||||||| |||||||||| | |||||||| ||||||||| || |||||||||||||||||||||||||||||||||    
T  10227321 gttcggtttaataaccaatgtaatggttcagttaattttagtttggttcagttcggttcagtttttggatatttttgcccacccct 10227406  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 10227250 - 10227328
Alignment:
Q  145 atgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtccggtt 224  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||||||||| | |||||||| ||||||||| || |||||    
T  10227250 atgaactttttttaaaa-aacggttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcggtt 10227328  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 42476517 - 42476615
Alignment:
Q  126 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtccggtt 224  Q
    |||||||| | |||| ||| |||| |||||||||||||||||||| |||||||||| | |  ||| ||||| |||||||| ||||||||| || |||||    
T  42476517 taaccgtttgattcagttagtgaattgtttttaaaataacggttcagttcaataactaatacaatagtttagttaattttagtttggttcagttcggtt 42476615  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 476 - 573
Target Start/End: Complemental strand, 44890392 - 44890294
Alignment:
Q  476 gctccgcggtagttaactgccgaagttccgcaagagttaactaccaccggttaacttccgcgataattaact-gcaaaggggtatttcggtattttact 573  Q
    ||||||||| |||||||||||||||||||||   |||||||||    |||||||||||||||| | ||||||  | |||||||||||| ||||||||||    
T  44890392 gctccgcggcagttaactgccgaagttccgcggtagttaactattgtcggttaacttccgcgacagttaactaccgaaggggtatttccgtattttact 44890294  T

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Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 37344674 - 37344564
Alignment:
Q  114 gttcggtttggttaaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggt 213  Q
    |||||||| ||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||| ||||| |    
T  37344674 gttcggttcggttaactgttcggttcggttaatgaactgtttttaaaataacggttcggttcaataaccaatgtaatgattcagttaattttagtttgat 37344575  T
Q  214 tcggtccggtt 224  Q
    || || |||||    
T  37344574 tcagttcggtt 37344564  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 578
Target Start/End: Complemental strand, 13580649 - 13580531
Alignment:
Q  461 aatttcaggtttgaagctccgcggtagttaactgccgaagttccgcaagagttaactaccaccggttaacttccgcgataattaactg-caaaggggtat 559  Q
    |||||||||||| ||| |  |||| |||||||||| |||||||||    ||||||||||| ||||||||||||||||  ||||||||| | |||| ||||    
T  13580649 aatttcaggttttaagttttgcggcagttaactgctgaagttccgttgtagttaactaccgccggttaacttccgcggcaattaactgccgaaggagtat 13580550  T
Q  560 ttcggtattttactggtgt 578  Q
    ||||||||||||| |||||    
T  13580549 ttcggtattttaccggtgt 13580531  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 578
Target Start/End: Original strand, 13590617 - 13590735
Alignment:
Q  461 aatttcaggtttgaagctccgcggtagttaactgccgaagttccgcaagagttaactaccaccggttaacttccgcgataattaactg-caaaggggtat 559  Q
    |||||||||||| ||| || |||| |||||||||| |||||||||    ||||||||||| ||||||||||||||||  ||||||||| | |||| ||||    
T  13590617 aatttcaggttttaagttctgcggcagttaactgctgaagttccgttgtagttaactaccgccggttaacttccgcggcaattaactgtcgaaggagtat 13590716  T
Q  560 ttcggtattttactggtgt 578  Q
    ||| ||||||||| |||||    
T  13590717 ttctgtattttaccggtgt 13590735  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 578
Target Start/End: Complemental strand, 13588745 - 13588646
Alignment:
Q  480 cgcggtagttaactgccgaagttccgcaagagttaactaccaccggttaacttccgcgataattaactg-caaaggggtatttcggtattttactggtgt 578  Q
    |||||||||||||||| ||||| | |    ||||||||||| ||||||||||| |||| || ||||||| | ||||| ||||| ||||||||||| ||||    
T  13588745 cgcggtagttaactgctgaagtactgtggcagttaactaccgccggttaactttcgcggtagttaactgccgaagggatattttggtattttactagtgt 13588646  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 50301926 - 50301850
Alignment:
Q  135 ggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttg 211  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||||||| |||||||||| | |||||||| |||||    
T  50301926 ggttcagttaatgaactgtttttaaaataatggttcggatcaataaccaatgtaatggttcagttaattttagtttg 50301850  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 581
Target Start/End: Complemental strand, 22935524 - 22935403
Alignment:
Q  461 aatttcaggtttgaagctccgcggtagttaactgccgaagttccgcaagagttaactaccaccggttaacttccgcgataattaactgc-aaaggggtat 559  Q
    |||||||| ||||||  | ||||| |||||||||||||||||||||   |||||||| || ||| ||||||||||||  | ||||||||  ||||| |||    
T  22935524 aatttcagatttgaattttcgcggcagttaactgccgaagttccgcggtagttaactgccgccgattaacttccgcggcagttaactgctgaagggatat 22935425  T
Q  560 ttcggtattttactggtgtttc 581  Q
    |||  |||||||||||||||||    
T  22935424 ttcaatattttactggtgtttc 22935403  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 32862150 - 32862061
Alignment:
Q  126 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttc 215  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||  | || |||| || | |||||||| |||||||||    
T  32862150 taaccgttcggttcagttagtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttc 32862061  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 536
Target Start/End: Original strand, 27297614 - 27297679
Alignment:
Q  471 ttgaagctccgcggtagttaactgccgaagttccgcaagagttaactaccaccggttaacttccgc 536  Q
    |||||| |||| |||||||||||||||||||||||| ||||||||||  | |||||||| ||||||    
T  27297614 ttgaagttccgtggtagttaactgccgaagttccgcgagagttaactgtcgccggttaatttccgc 27297679  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 10773559 - 10773480
Alignment:
Q  131 gttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgttt 210  Q
    |||||||||| |||||  || ||||||||||||||||||||||||||||| || |  ||||||| | |||||||| ||||    
T  10773559 gttcggttcagttaattgaccgtttttaaaataacggttcggttcaataatcaataaaatggttcagttaattttagttt 10773480  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 25638501 - 25638461
Alignment:
Q  212 gttcggtccggttcagtttttggatatttttgcccacccct 252  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  25638501 gttcggttcggttcagtttttggttatttttgcccacccct 25638461  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 4317461 - 4317559
Alignment:
Q  126 taaccgttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggtccggtt 224  Q
    |||| ||||| |||| |||||||||||| || |||||| |||||| |||||||| ||||| ||| ||||   |||||||| || ||| ||||| |||||    
T  4317461 taacggttcgattcagttaatgaactgtcttcaaaatagcggttcagttcaatatccactataaaggttcggttaattttagtatggatcggttcggtt 4317559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 504
Target Start/End: Complemental strand, 48343402 - 48343365
Alignment:
Q  467 aggtttgaagctccgcggtagttaactgccgaagttcc 504  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  48343402 aggtttgaagctccgcggcagttaactgtcgaagttcc 48343365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 578
Target Start/End: Original strand, 4879918 - 4880020
Alignment:
Q  478 tccgcggtagttaactgccgaagttccgcaagagttaactaccaccggttaacttccgcgataattaactgc--aaaggggtatttcggtattttactgg 575  Q
    ||||| |||||||| ||||||||||||||   |||||||||||  | |||||||||| | | | ||||||||  ||||||||||||||  | ||||||||    
T  4879918 tccgcagtagttaattgccgaagttccgcggtagttaactaccgtcagttaacttccacaacagttaactgccgaaaggggtatttcgaaaatttactgg 4880017  T
Q  576 tgt 578  Q
    |||    
T  4880018 tgt 4880020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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