View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_32 (Length: 227)
Name: NF13862_low_32
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 4198403 - 4198183
Alignment:
| Q |
7 |
aaggcctcatcgccagaaatctgtacaataacatcagagatgaaatttttgattccattctgctgatcagctagtaatgtattccatctatatttaatta |
106 |
Q |
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| T |
4198403 |
aaggcctcatcgccagaaatctgtacaataacatcagagatgaaatttttgattccattctgctgatcagctagtaatgtattccatctatattgaatta |
4198304 |
T |
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| Q |
107 |
caccctctagaacctttagagcaaagaacttggtattttgattatgtgtgttcggtaaaatatccaagacttgcagccacatatccggattattttgcag |
206 |
Q |
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| T |
4198303 |
cagcctctagaacctttagagcaaagaacttggtattttgattatgtgtgttctgtaaaatatgcaagacttgcagccacatatccggattattttgcag |
4198204 |
T |
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| Q |
207 |
ttccatcaaaaccttgccagc |
227 |
Q |
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| T |
4198203 |
ttccatcaaaaccttgccagc |
4198183 |
T |
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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 1517501 - 1517417
Alignment:
| Q |
126 |
agcaaagaacttggtattttgattatgtgtgttcggtaaaatatccaagacttgcagccacatatccggattattttgcagttcc |
210 |
Q |
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| T |
1517501 |
agcaaagaacttggtatttagattttgagtgttctgtaaaatatgcatgacttgtagccacatgtctggattattttgcaattcc |
1517417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 1519065 - 1518971
Alignment:
| Q |
27 |
ctgtacaataacatcagagatgaaatttttgattccattctgctgatcagctagtaatgtattccatctatatttaattacaccctctagaacct |
121 |
Q |
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| T |
1519065 |
ctgtacaataacatcggagatgaaatttttcattccatctcgctgctcaaccggtagtgcgttccatctatatttaatcacaccctctagcacct |
1518971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 29750283 - 29750373
Alignment:
| Q |
31 |
acaataacatcagagatgaaatttttgattccattctgctgatcagctagtaatgtattccatctatatttaattacaccctctagaacct |
121 |
Q |
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| T |
29750283 |
acaataatatcagagatgaaatttttcattccatctcgctgctcggcaggtaaggcattccatctatatttaattacgccttcaagaacct |
29750373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 29751214 - 29751292
Alignment:
| Q |
127 |
gcaaagaacttggtattttgattatgtgtgttcggtaaaatatccaagacttgcagccacatatccggattattttgca |
205 |
Q |
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| T |
29751214 |
gcaaaaaacttggtattgagattttgagtattctgcaaaatatgcatgacttgcagccacatatcaggattattttgca |
29751292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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