View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_4 (Length: 531)
Name: NF13862_low_4
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 265 - 531
Target Start/End: Original strand, 1160824 - 1161094
Alignment:
| Q |
265 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagacctataattattggaacaaa |
364 |
Q |
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| T |
1160824 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagatctataattattggaacaaa |
1160923 |
T |
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| Q |
365 |
cttaattacgatataaacatgtatagatcaaaccatta----atatatatgttgaaatattaagaatgcaattcaatggataaacatacctcaaccgaaa |
460 |
Q |
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| T |
1160924 |
cttaattaccatataaacatgtatagatcaaatcattaatatatatatatgttgaaatattaagaatgcaattcaatggataaacatacctcaaccgaaa |
1161023 |
T |
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| Q |
461 |
ataatctcagaagggaggggaacaaacttgaaggagagatatctacgatataaacaataaacaagtgaatc |
531 |
Q |
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| T |
1161024 |
ataatctcagaagggaagggaacaaacttgaaggagagatatctacgatataaacaataaacaaatgaatc |
1161094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 1160532 - 1160712
Alignment:
| Q |
6 |
agcttgttcattgctttgcatgcttctagcttcatctttgtttgatatggcttgagcaaatgaattgataagtaggaacaagactagaaacattgaaatc |
105 |
Q |
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| T |
1160532 |
agcttgttcattgctttgaatgcttctagcttcatctttgtttgatatggcttgagcacatgaattgataagtaggaacaagactagaaacattgaaatc |
1160631 |
T |
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| Q |
106 |
ttcatattcatttgatatggcttcatttgaactgtagtcattggttggtagggtaaaggggttatataaagactttaattgaagg |
190 |
Q |
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| T |
1160632 |
ttcatattcatttgatatggcttcatttgaactgtagtca----ttggtagggtaaaggggttatataaagactttaattgaagg |
1160712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 1160714 - 1160755
Alignment:
| Q |
216 |
tgaaagtaatttaatgtggtcccaaaaaatggtaatagaaag |
257 |
Q |
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| T |
1160714 |
tgaaagtaattcaatgtggtcccaaaaaatggtaatagaaag |
1160755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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