View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_5 (Length: 503)
Name: NF13862_low_5
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 50712094 - 50712538
Alignment:
| Q |
19 |
aagtaaccctcaaaacaataacatagagattattataacttttgtcaaaagaaaaagtaaattattataactcaacttggaatatcgttattacaacaat |
118 |
Q |
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| T |
50712094 |
aagtaaccctcaaaacaataacatagagattattataacttttgtcaaaagaaaaagtaaattattataactcaacttggaatatcgtta-tacaacaat |
50712192 |
T |
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| Q |
119 |
ctcatatatatgagatttatactcctttattccgacacctcttatacattgttttttattataacttaattaacatagttaatttatagttacctctaag |
218 |
Q |
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| T |
50712193 |
ctc----atatgagatttatactcctttattccgacacctcttatacattgttttttattataac----ttaacatagtttatttatagttacctctaag |
50712284 |
T |
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| Q |
219 |
acattatttattttattcattaaactcaacaacatagtttatagtcttaacctatagaagtagctactagacacttagctatacgaccatctgctccctt |
318 |
Q |
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| T |
50712285 |
acattgtttattttagtc--ttaactc-------------------ttaacctatagaagtagctactagacacttagctatacgaccatctgctccctt |
50712363 |
T |
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| Q |
319 |
aggaaagaagccaccaggaacaatttcatatcgaccatacactatcctcaatatttcttctggagtccttgaatatgaaactgaatttttgtcaccagca |
418 |
Q |
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| T |
50712364 |
aggaaagaagccaccaggaacaatttcatatcgaccatacactatcctcaatatttcttctggagtccttgaatatgaaagtgaatttttgtcaccagca |
50712463 |
T |
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| Q |
419 |
agtacatttcctgaaactttaccttcagcaccctgtgatatagggacctctagaccctcatcttttacgcctttg |
493 |
Q |
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| T |
50712464 |
agtacatttcctgaaactttaccttcagcaccttgtgatatagggacctctagaccctcatcttttacgcctttg |
50712538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 296 - 405
Target Start/End: Complemental strand, 12783971 - 12783859
Alignment:
| Q |
296 |
gctatacgaccatctgctcccttaggaaagaagccaccaggaacaatttcatatcga---ccatacactatcctcaatatttcttctggagtccttgaat |
392 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||| | |||| | | ||||| | |||||||||||||||| ||||||||||| || |
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| T |
12783971 |
gctatacgaccatctgctcccttagggtagaagccaccagggacactctcattaccacttccatatataatcctcaatatttcttgtggagtccttggat |
12783872 |
T |
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| Q |
393 |
atgaaactgaatt |
405 |
Q |
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| T |
12783871 |
atgatagtgaatt |
12783859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 12772025 - 12771958
Alignment:
| Q |
365 |
ctcaatatttcttctggagtccttgaatatgaaactgaatttttgtcaccagcaagtacatttcctga |
432 |
Q |
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| T |
12772025 |
ctcaatatttcatttggagttcttgaatatgatagtgaatttttatcaccagcaaggatatttcctga |
12771958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Complemental strand, 12762618 - 12762584
Alignment:
| Q |
362 |
atcctcaatatttcttctggagtccttgaatatga |
396 |
Q |
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| T |
12762618 |
atcctcaatatttcttgtggagtccttgaatatga |
12762584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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