View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13862_low_8 (Length: 456)

Name: NF13862_low_8
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13862_low_8
NF13862_low_8
[»] chr8 (6 HSPs)
chr8 (23-439)||(23341775-23342191)
chr8 (23-439)||(23384943-23385359)
chr8 (285-439)||(23285618-23285772)
chr8 (285-439)||(23392793-23392947)
chr8 (82-197)||(23285854-23285969)
chr8 (82-197)||(23392599-23392714)
[»] chr3 (12 HSPs)
chr3 (327-435)||(5849835-5849943)
chr3 (351-435)||(5489191-5489275)
chr3 (327-435)||(5453998-5454106)
chr3 (363-435)||(5502040-5502112)
chr3 (327-435)||(5829086-5829194)
chr3 (327-435)||(20342742-20342850)
chr3 (327-430)||(5855002-5855105)
chr3 (142-184)||(1076815-1076857)
chr3 (142-184)||(1300163-1300205)
chr3 (330-406)||(1050099-1050175)
chr3 (327-435)||(5445415-5445523)
chr3 (327-435)||(5803408-5803516)
[»] chr6 (2 HSPs)
chr6 (318-391)||(3979413-3979486)
chr6 (327-435)||(25810289-25810397)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 23 - 439
Target Start/End: Complemental strand, 23342191 - 23341775
Alignment:
Q  23 atcatctagcacattttcaatggcggaaaaaatattttaggttaaagaaagaagagcctgatctgccaatatttagttttccaatcattgttaaagcaac 122  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23342191 atcatctagcaccatttcaatggcggaaaaaatattttaggttaaagaaagaagagcctgatctgccaatatttagttttccaatcattgttaaagcaac 23342092  T
Q  123 cggtaatttttctagcagaaataaacttggggaaggtggatttggaccagtttataaggtaatattgccttattccattaacatgttaatttttaaaaag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23342091 cggtaatttttctagcagaaataaacttggggaaggtggatttggaccagtttataaggtaatattgccttattccattaacatgttaatttttaaaaag 23341992  T
Q  223 aatatgattcattaaatgtttcaaatgatggttttcagggtaccctgataggcggaaaagatgtagccataaaacggaactcaaaaatgtctgatcaagg 322  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23341991 aataagattcattaaatgtttaaaatgatggttttcagggtaccctgataggcggaaaagaggtagccataaaacggaactcaaaaatgtctgatcaagg 23341892  T
Q  323 gttggaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23341891 gttggaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattg 23341792  T
Q  423 ttgatctatgaatacat 439  Q
    |||||||||||||||||    
T  23341791 ttgatctatgaatacat 23341775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 23 - 439
Target Start/End: Original strand, 23384943 - 23385359
Alignment:
Q  23 atcatctagcacattttcaatggcggaaaaaatattttaggttaaagaaagaagagcctgatctgccaatatttagttttccaatcattgttaaagcaac 122  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23384943 atcatctagcatcatttcaatggcggaaaaaatattttaggttaaagaaagaagagcctgatctgccaatatttagttttccaatcattgttaaagcaac 23385042  T
Q  123 cggtaatttttctagcagaaataaacttggggaaggtggatttggaccagtttataaggtaatattgccttattccattaacatgttaatttttaaaaag 222  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23385043 tggtaatttttctagcagaaataaacttggggaaggtggatttggaccggtttataaggtaatattgccttattccattaacatgttaatttttaaaaag 23385142  T
Q  223 aatatgattcattaaatgtttcaaatgatggttttcagggtaccctgataggcggaaaagatgtagccataaaacggaactcaaaaatgtctgatcaagg 322  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23385143 aatatgattcattaaatgttttaaatgatggttttcagggtaccctgataggcggaaaagaggtagccataaaacggaactcaaaaatgtctgatcaagg 23385242  T
Q  323 gttggaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23385243 gttggaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattg 23385342  T
Q  423 ttgatctatgaatacat 439  Q
    |||||||||||||||||    
T  23385343 ttgatctatgaatacat 23385359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 285 - 439
Target Start/End: Complemental strand, 23285772 - 23285618
Alignment:
Q  285 gtagccataaaacggaactcaaaaatgtctgatcaagggttggaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtga 384  Q
    ||||||||||||||  |||||||  |||| |||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  23285772 gtagccataaaacgacactcaaaggtgtcagatcaaggattggaggagtttaaaaatgaagttgtgttgattgcaaaacttcaacaccgtaatcttgtga 23285673  T
Q  385 agcttctcggttgttgtattcacagagaggaaaaattgttgatctatgaatacat 439  Q
    ||||||| ||||| || ||||| ||||||||||  || ||||| |||||||||||    
T  23285672 agcttcttggttgctgcattcatagagaggaaatgttattgatatatgaatacat 23285618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 285 - 439
Target Start/End: Original strand, 23392793 - 23392947
Alignment:
Q  285 gtagccataaaacggaactcaaaaatgtctgatcaagggttggaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtga 384  Q
    ||||||||||||||| |||||||  |||| |||||||| |||||||| ||||||||||||||| |||||||||| || ||||| ||||||||||||||||    
T  23392793 gtagccataaaacggcactcaaaggtgtcagatcaaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtga 23392892  T
Q  385 agcttctcggttgttgtattcacagagaggaaaaattgttgatctatgaatacat 439  Q
    ||||||| ||||| || ||||| | ||||||||  || ||||| |||||||||||    
T  23392893 agcttcttggttgctgcattcataaagaggaaatgttattgatatatgaatacat 23392947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 23285969 - 23285854
Alignment:
Q  82 gatctgccaatatttagttttccaatcattgttaaagcaaccggtaatttttctagcagaaataaacttggggaaggtggatttggaccagtttataagg 181  Q
    ||||| || ||||||  |||| ||||| |||||||||| ||   ||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  23285969 gatctaccgatatttgatttttcaatccttgttaaagccacttataacttctctagcacaaataaacttggggaaggtggatttggaccagtgtataagg 23285870  T
Q  182 taatattgccttattc 197  Q
    |||||| ||| |||||    
T  23285869 taatatagccatattc 23285854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 23392599 - 23392714
Alignment:
Q  82 gatctgccaatatttagttttccaatcattgttaaagcaaccggtaatttttctagcagaaataaacttggggaaggtggatttggaccagtttataagg 181  Q
    ||||| || ||||||  |||| ||||| |||||||||| ||   ||| |||||||||| || |||||||||||||||||||||||||||||| |||||||    
T  23392599 gatctaccgatatttgctttttcaatccttgttaaagccactaataacttttctagcacaagtaaacttggggaaggtggatttggaccagtgtataagg 23392698  T
Q  182 taatattgccttattc 197  Q
    |||||| ||| |||||    
T  23392699 taatatagccatattc 23392714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 435
Target Start/End: Original strand, 5849835 - 5849943
Alignment:
Q  327 gaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttga 426  Q
    ||||| || |||||||||||   |||||| ||||  ||||| |||||||||||||| || ||||| ||||||| ||||||   ||| ||||| |||||||    
T  5849835 gaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagttgttga 5849934  T
Q  427 tctatgaat 435  Q
    |||||||||    
T  5849935 tctatgaat 5849943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 435
Target Start/End: Complemental strand, 5489275 - 5489191
Alignment:
Q  351 ttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattc-acagagaggaaaaattgttgatctatgaat 435  Q
    ||||| |||| |||||| |||||||||||||| || ||||| ||||||| ||||| ||| ||| ||||| ||||||||||||||||    
T  5489275 ttgatggcaacgcttcaacaccgtaatcttgtaaaacttcttggttgttctattcgaca-agaagaaaagttgttgatctatgaat 5489191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 435
Target Start/End: Complemental strand, 5454106 - 5453998
Alignment:
Q  327 gaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttga 426  Q
    ||||| || |||||||||||   |||||| ||||  ||||| |||||||||||||| || ||||| ||||||| ||||||   ||| ||||| |||||||    
T  5454106 gaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagttgttga 5454007  T
Q  427 tctatgaat 435  Q
    |||| ||||    
T  5454006 tctacgaat 5453998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 5502112 - 5502040
Alignment:
Q  363 cttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttgatctatgaat 435  Q
    ||||| |||||||||||||| || ||||| ||||||| ||||||   ||| ||||| ||||||||||||||||    
T  5502112 cttcaacaccgtaatcttgttaaacttcttggttgttctattcaacaagatgaaaagttgttgatctatgaat 5502040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 435
Target Start/End: Original strand, 5829086 - 5829194
Alignment:
Q  327 gaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttga 426  Q
    |||||||| |||||||||||   |||||| ||||  ||||| |||||||||||||| || ||| | ||||||| ||||||   ||| ||||| |||||||    
T  5829086 gaggaattcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaactttttggttgttctattcaacaagatgaaaagttgttga 5829185  T
Q  427 tctatgaat 435  Q
    |||| ||||    
T  5829186 tctacgaat 5829194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 435
Target Start/End: Complemental strand, 20342850 - 20342742
Alignment:
Q  327 gaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttga 426  Q
    ||||| || |||||||||||   |||||| ||||  ||||| |||||||||||||| || ||||| ||||||| ||||||   ||| |||||  ||||||    
T  20342850 gaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagatgttga 20342751  T
Q  427 tctatgaat 435  Q
    |||||||||    
T  20342750 tctatgaat 20342742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 430
Target Start/End: Original strand, 5855002 - 5855105
Alignment:
Q  327 gaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttga 426  Q
    ||||| || |||||||||||   |||||| ||||  ||||||||| | |||||||| || ||||| ||||||| |||||||  ||| ||||| |||||||    
T  5855002 gaggagttcaaaaatgaagtgaagttgatggcaacacttcagcacagaaatcttgtaaaacttcttggttgttctattcaccaagatgaaaagttgttga 5855101  T
Q  427 tcta 430  Q
    ||||    
T  5855102 tcta 5855105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 1076815 - 1076857
Alignment:
Q  142 aataaacttggggaaggtggatttggaccagtttataaggtaa 184  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||    
T  1076815 aataaacttggagaaggtggctttggaccagtatataaggtaa 1076857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 1300205 - 1300163
Alignment:
Q  142 aataaacttggggaaggtggatttggaccagtttataaggtaa 184  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||    
T  1300205 aataaacttggagaaggtggctttggaccagtatataaggtaa 1300163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 1050099 - 1050175
Alignment:
Q  330 gaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattca 406  Q
    |||||||||||||||||| | ||   |||||| ||||| ||||| |||||||| ||| |||| |||||||| |||||    
T  1050099 gaatttaaaaatgaagttatattatgtgcaaaacttcaacaccgaaatcttgttaaggttcttggttgttgcattca 1050175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 435
Target Start/End: Complemental strand, 5445523 - 5445415
Alignment:
Q  327 gaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttga 426  Q
    ||||| || |||||||||||   |||||| ||||  ||||| |||||||||||||| || ||||| ||||||| ||||||   ||| |||||  ||||||    
T  5445523 gaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagatgttga 5445424  T
Q  427 tctatgaat 435  Q
    |||| ||||    
T  5445423 tctacgaat 5445415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 435
Target Start/End: Original strand, 5803408 - 5803516
Alignment:
Q  327 gaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttga 426  Q
    ||||| || |||||||||||   |||||| ||||  ||||| ||||||||||| || || ||||| || |||| ||||||   ||| ||||| |||||||    
T  5803408 gaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatctagtaaaacttcttggctgttctattcaacaagatgaaaagttgttga 5803507  T
Q  427 tctatgaat 435  Q
    |||||||||    
T  5803508 tctatgaat 5803516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 3979486 - 3979413
Alignment:
Q  318 caagggttggaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttct 391  Q
    ||||||||| ||||||| ||||||||||    ||||||||| || ||||| |||||||||||||| || |||||    
T  3979486 caagggttgcaggaattcaaaaatgaagcggcgttgattgccaaacttcaacaccgtaatcttgtcaaacttct 3979413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 435
Target Start/End: Original strand, 25810289 - 25810397
Alignment:
Q  327 gaggaatttaaaaatgaagttttgttgattgcaaagcttcagcaccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttga 426  Q
    ||||| || |||||||||||   |||||| ||||  ||||| |||||||||||||| || ||||| ||||||| ||||||   ||| |||||  ||||||    
T  25810289 gaggagttcaaaaatgaagtaaagttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagatgttga 25810388  T
Q  427 tctatgaat 435  Q
    |||| ||||    
T  25810389 tctaagaat 25810397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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