View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13862_low_9 (Length: 452)
Name: NF13862_low_9
Description: NF13862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13862_low_9 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 40 - 452
Target Start/End: Complemental strand, 10353476 - 10353063
Alignment:
| Q |
40 |
cctcgacaaagcttggatgatcattttgtata-aaatagagaaacaacataaagttatagtaattacgaccttttttaacggtatttgttgacaataagg |
138 |
Q |
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| T |
10353476 |
cctcaacaaagcttggatgatcctgttgtatagaaaaagagaaacaacataaagttatagtaataaaaactttttctaacactacttattgaaaataagg |
10353377 |
T |
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| Q |
139 |
agttaaatgacataaaagaacttcaggaatctattgaaaatagatacacattctaatactttttaatattaatgaaggtatgttcgtattaggttttaga |
238 |
Q |
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| T |
10353376 |
agttacatgacataaaagaacttcaagaatctattgaaaattaatacacattctaatactgtttaatattaacgaagctatgttcgtattagg-tttaga |
10353278 |
T |
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| Q |
239 |
gcatcaattcattaattatttgaataggtgatatcaatttagtcgtaa-nnnnnnnnagttaaatcacaatattatttaaaaccaacttataaattatgg |
337 |
Q |
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| T |
10353277 |
gcatcaatttattaattatttgaataggtaatatcaatttagtcgtaatacaaatttatttaaatcacaatactatttaaaaccaacttataaattatga |
10353178 |
T |
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| Q |
338 |
aattaccttcagttggaagatggaagaaacacccttactagttgtttggatttaactttttccccacatgttagacatttaccatgtgaagaagttattg |
437 |
Q |
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| T |
10353177 |
aattaccttcggttggaagatggaagaaacacccttactagttgtttcgatttaaccttttccccacatgttggacatttaccatgtgaagaagttattg |
10353078 |
T |
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| Q |
438 |
cagctttgatgcact |
452 |
Q |
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| T |
10353077 |
caactttgatgcact |
10353063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 11824861 - 11824578
Alignment:
| Q |
1 |
aaggtagcacaccatgaagtattattcattccnnnnnnncctcgacaaagcttggatgatcattttgtata-aaatagagaaacaacataaagttatagt |
99 |
Q |
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| T |
11824861 |
aaggtagcaca--atgaagtattattcagtcctacttttcctcaacaatgcttggatgatcctattgtatagaaaaagagaaacaacataaggttatagt |
11824764 |
T |
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| Q |
100 |
aattacgaccttttttaacggtatttgttgacaataaggagttaaatgacataaaagaacttcaggaatctattgaaaatagatacacattctaatactt |
199 |
Q |
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| T |
11824763 |
agttacaactttttctaacactacttattgaaaataaggagttaaatgacatcaaataactttaggaatctattgaaaattgatacacattctaatactt |
11824664 |
T |
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| Q |
200 |
tttaatattaatgaaggtatgttcgtattaggttttagagcatcaattcattaattatttgaataggtgatatcaatttagtcgtaa |
286 |
Q |
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| T |
11824663 |
tttaatatgaatgaaagtatgttcgtattaag-tttagagaatcaatttattaattttttgaatatgtaatatcaatttagttgtaa |
11824578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 299 - 418
Target Start/End: Complemental strand, 11824539 - 11824420
Alignment:
| Q |
299 |
aaatcacaatattatttaaaaccaacttataaattatggaattaccttcagttggaagatggaagaaacacccttactagttgtttggatttaacttttt |
398 |
Q |
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| T |
11824539 |
aaatcataatactatttaaaaccaacttataaattatggaattaccttcggttgaaagatggaagaaacacccttactagttgtttcggtttaacctttt |
11824440 |
T |
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| Q |
399 |
ccccacatgttagacattta |
418 |
Q |
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| T |
11824439 |
ccccacatgttggacattta |
11824420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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