View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13863_high_2 (Length: 438)
Name: NF13863_high_2
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13863_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 2427854 - 2428280
Alignment:
| Q |
1 |
tgaaccccacgtggaaataaataaataaatgtgagcaaaagactcaaatcc-atctagttgatctatataagaaattaaaaatacaaattttgttctt-- |
97 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2427854 |
tgaaccccacgtggaaataaataaataaatatgagcaaaagactcaaatcccatatagttgatctatataagaaattaaaaatacaaattttattcttta |
2427953 |
T |
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| Q |
98 |
-aatttcaaatgtcaatcaaattagttatttttatggattattttaagagacgttttattatccatcagaaactattttgaccgacatttgaagttttat |
196 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2427954 |
aaatttcaaatgtcaatcaaattagttacttttatggattattttaagagacgttttattatccatcagaaactattttgaccgacatttgaagttttat |
2428053 |
T |
|
| Q |
197 |
aaaggcttgataaatattctttttatttcttattggcaaatttgtcaccatattttaatgaacaataactttggaactatactcaataaacaaaaacaaa |
296 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2428054 |
aaaggcttgataaatatt-tttttatttcttattggcaaatttgtcaccatattttaatgaacaataactttggaactatactcaataaacaaaaacaaa |
2428152 |
T |
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| Q |
297 |
taagcacactcattcattgatggattcagcttaattcctattgagaagttcttctatcatctgaagtgcaattctttgttcttcatccaatcctttgtta |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2428153 |
taagcacactcattcattgatggattcagcttaattcctattgagaagttcttctatcatctgaagtgcaattcgttgttcttcatccaatcctttgttc |
2428252 |
T |
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| Q |
397 |
ttatcattttcttcttcatcttcatttt |
424 |
Q |
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||||||||| |||||||||||||||||| |
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| T |
2428253 |
ttatcatttccttcttcatcttcatttt |
2428280 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 44648311 - 44648363
Alignment:
| Q |
334 |
ctattgagaagttcttctatcatctgaagtgcaattctttgttcttcatccaa |
386 |
Q |
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| T |
44648311 |
ctattgagaagttcttctatcatctgcaaagcaattttctgttcatcatccaa |
44648363 |
T |
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