View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13863_high_7 (Length: 302)
Name: NF13863_high_7
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13863_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 5951569 - 5951298
Alignment:
| Q |
18 |
catatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaat |
117 |
Q |
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| T |
5951569 |
catatagtgagtgtactaacccggcacaaatatacaagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaat |
5951470 |
T |
|
| Q |
118 |
aatatataagtattttttctatctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5951469 |
aatatataagtattttttctatctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgagagtttattggaaaat |
5951370 |
T |
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| Q |
218 |
gcctagtaaatgcagcaaggagaccatcagcaaaagaactgttgcatgatccatttcttgtgtctgatgatg |
289 |
Q |
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| T |
5951369 |
gcctagtaaatgcagcaaggagaccatcagcaaaagaactgttgcatgatccatttcttgtgtctgatgatg |
5951298 |
T |
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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 282
Target Start/End: Complemental strand, 22396679 - 22396537
Alignment:
| Q |
140 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggag |
239 |
Q |
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|||| ||||||||| |||||||||||| | ||||| ||| || |||||||| |||| ||| |||||||||| |||||||||||| || |||| || | |
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| T |
22396679 |
cttttaatgttcagtgtaagctaccagaagcacttatcctgatagaagatgccgaagtacgagagtttattgaaaaatgcctagtgaaagcagtaaaaaa |
22396580 |
T |
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| Q |
240 |
accatcagcaaaagaactgttgcatgatccatttcttgtgtct |
282 |
Q |
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| T |
22396579 |
acctttggcaaaataactgctgcatgatccatttcttgtgtct |
22396537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 22396811 - 22396747
Alignment:
| Q |
22 |
tagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtt |
86 |
Q |
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||||||||||||| ||||||| | ||| ||||||||||||||||||||||| ||| ||||||| |
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| T |
22396811 |
tagtgagtgtactgacccagctctgttattcaagaaagtgacatcggtaaattcagatcttggtt |
22396747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 28153837 - 28153921
Alignment:
| Q |
140 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagt |
224 |
Q |
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| T |
28153837 |
cttttaatgttcaaggtatgctaccagcaacacttttctgatttgaagatgcaaaagcattggagtttattggaaaatgcctagt |
28153921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 31951706 - 31951650
Alignment:
| Q |
18 |
catatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaatt |
74 |
Q |
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|||||||||| |||||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
31951706 |
catatagtgaatgtactaatccagcacagatatacaagaaagtgacatcggtaaatt |
31951650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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