View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13863_low_1 (Length: 532)
Name: NF13863_low_1
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13863_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 6 - 516
Target Start/End: Complemental strand, 51837281 - 51836777
Alignment:
| Q |
6 |
acatcatcaatacaaacaaaatctagcaaatgtttgtttgtaagaaaatgaaaaggggaaagaaatcgtttgaatgctgcttgggtctattgtgggatac |
105 |
Q |
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| T |
51837281 |
acatcatcaatacaaacaaaatctagcaaatgtttgtttgtaagaaaatgaaaaggggaaagaaatcgtttgaatgctgcttgggtctattgtgggatac |
51837182 |
T |
|
| Q |
106 |
tgatgctcacaactgctgatttagctca-aaaattttt-tcgcttgccaattcaatcatacaacactcctttttgcctgtgctctactccttaactctct |
203 |
Q |
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|||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51837181 |
tgatgctcacaactgctgatttcgctcataaaatttttgtcgcttgccaattcaatcatacaacactcctttttgcctgtgctctactccttaactctct |
51837082 |
T |
|
| Q |
204 |
catatgcaaccacaatggtatcattatctccctgtttgttgtaaatatattttcttgttagggattagata--------gttcaactgatttgaactaaa |
295 |
Q |
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| T |
51837081 |
catatgcaaccacaatggtatcattatttccctg----------------tttcttgttaggggttagatagttcaagtgttcaactgatttgaactaaa |
51836998 |
T |
|
| Q |
296 |
agaatatgagtttgaggtcgtaggtttaaatatgaacaaagagtaaaaatactattctaacaaaccaactaccaacatttatttaaaaaacaataattta |
395 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51836997 |
agaatatgagtttgaggtcgtaggtttaaatctgaacaaagagtaaaaatactattttaacaaaccaactaccaacatttatttaaaaaacaataattta |
51836898 |
T |
|
| Q |
396 |
tattcctgttagtatataagcnnnnnnngattttgtaaaaacaatagctttgttgaattaatttcttgaaagatacatgcatatgcatatgatatatgcg |
495 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51836897 |
tattcctgttagtatataagctttttttgattctgtaaaaacaatagctttgttgaattaatttcttgaaagatacatgcatatgcatatgatatatgcg |
51836798 |
T |
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| Q |
496 |
ctcatcttctagccttgagtg |
516 |
Q |
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| T |
51836797 |
ctcatcttctagccttgagtg |
51836777 |
T |
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