View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13863_low_10 (Length: 272)
Name: NF13863_low_10
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13863_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 43585538 - 43585301
Alignment:
| Q |
19 |
aatctctgtcacaactccttcaccagctccaactccagaagcaacactgtggataggaattgtctgaaaataaatacatagcatacaatcagttatggaa |
118 |
Q |
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| T |
43585538 |
aatctctgtcacaactccttcaccagctccaactccagaagcaacactgtggataggaattgtctgaaaacaaatacatagcacacaatcagttatggaa |
43585439 |
T |
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| Q |
119 |
ctattgatgttttaaaattcaaaaaggtatgaaacttgtgatgcaagaatgataaacataccaagcctcctgtggcatacttgaggagaaagcatgctac |
218 |
Q |
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| T |
43585438 |
ctattgatgttttaaaattcaaaaaggtatgaaacttgtgatgcaagaatgataaacataccaagcctcctgtggcatacttgaggagaaagcatgccac |
43585339 |
T |
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| Q |
219 |
tatggaaccaagaagttgtgcaatccagtagaagatac |
256 |
Q |
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| T |
43585338 |
tatggaaccaagaagttgtgcaatccagtagaagatac |
43585301 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 4190049 - 4190134
Alignment:
| Q |
171 |
taaacataccaagcctcctgtggcatacttgaggagaaagcatgctactatggaaccaagaagttgtgcaatccagtagaagatac |
256 |
Q |
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| T |
4190049 |
taaacttaccaagcctccagtgacaaactggagaagaaaacatgcaacaatggatccaagaagctgagcaatccagtagaagatac |
4190134 |
T |
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