View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13863_low_14 (Length: 237)
Name: NF13863_low_14
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13863_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 18679134 - 18679011
Alignment:
| Q |
35 |
tttgtttacttgagggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatatggtagttagt |
134 |
Q |
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| T |
18679134 |
tttgtttacttgagggacaagttaggtcacataagcttgtatgattatggattaaagagggtgtattaaaatattaatccataatcatatggtagttagt |
18679035 |
T |
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| Q |
135 |
tacataatcg-ttttcggactttg |
157 |
Q |
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| T |
18679034 |
tacataaccgtttttcggactttg |
18679011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 18678993 - 18678933
Alignment:
| Q |
161 |
aacttgcatcacaaatcaagtgtatataactagttgtaatgctctttttcaacaatcaatg |
221 |
Q |
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| T |
18678993 |
aacttacatcacaaatcaagtgtatacagctagttgtgatactctttttcatcaatcaatg |
18678933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 30808145 - 30808011
Alignment:
| Q |
100 |
ttagaatattaatccataatcatatggtagttagttacataatcgttttcggactttggtga-------------acttgcatcacaaatcaagtgtata |
186 |
Q |
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| T |
30808145 |
ttagaatattaatccataatcatagggtagttagttacataaccatttctggactttgctgagtagttactgataacttgcataacaagtcaagtgtata |
30808046 |
T |
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| Q |
187 |
taactagttgtaatgctctttttcaacaatcaatg |
221 |
Q |
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| T |
30808045 |
taactaattgcaatgctctttttcatcaatcaatg |
30808011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 8543775 - 8543714
Alignment:
| Q |
161 |
aacttgcatcacaaatcaagtgtatataactagttgtaatgc-tctttttcaacaatcaatg |
221 |
Q |
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| T |
8543775 |
aacttgcatcacaagtcaagtgtatataactagttgtaatgcttttttttcatcaatcaatg |
8543714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 40197536 - 40197477
Alignment:
| Q |
161 |
aacttgcatcacaaatcaagtgtatataactagttgtaatgctctttttcaacaatcaatg |
221 |
Q |
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| T |
40197536 |
aacttgcatcacaagtcaagtgtatataactagttgtaatgct-tctttcatcaatcaatg |
40197477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 18508541 - 18508600
Alignment:
| Q |
34 |
atttgtttacttgagggacaagttatgcctcataagcttgtatgattatggattaaaggg |
93 |
Q |
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| T |
18508541 |
atttgtttacttgagggacaaattaggtctcataagcttgtaggattatagattaaaggg |
18508600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 33704597 - 33704514
Alignment:
| Q |
41 |
tacttgagggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatat |
124 |
Q |
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| T |
33704597 |
tacttaagggacaagttaggtctcataagcttgtaagattatggattaaaggggttgtattaaatgactaatccataatcatat |
33704514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 33716928 - 33716852
Alignment:
| Q |
47 |
agggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatat |
124 |
Q |
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| T |
33716928 |
agggacaagtta-gtctcataagcttgtaagattgtggattaaaggggttgtattaaatgactaatccataatcatat |
33716852 |
T |
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