View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13863_low_15 (Length: 228)
Name: NF13863_low_15
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13863_low_15 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 30956633 - 30956854
Alignment:
| Q |
7 |
attccatgattttctttgaagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatcacgtcacccatttaggagtttact |
106 |
Q |
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| T |
30956633 |
attccatgattttctttgaagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatcacgtcacccatttaggagtttact |
30956732 |
T |
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| Q |
107 |
gcctatgtcatgaaatcaccaaaatttgctcagctttatgttttttcaatgcaaagaatgaaatacaaaatagaatgcaaggttacaagtatatacagtc |
206 |
Q |
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| T |
30956733 |
gcctatgtcatgaaatcaccaaaatttgctcagctttatgttttttcaatgcaaagaatgaaatacaaaatagaatgcaaggttacaagtatatacagtc |
30956832 |
T |
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| Q |
207 |
gacagaagttgttgcttttatt |
228 |
Q |
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| T |
30956833 |
gacagaagttgttgcttttatt |
30956854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 30946407 - 30946597
Alignment:
| Q |
17 |
tttctttgaagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatcacgtcacccatttaggagtttactgcctatgtca |
116 |
Q |
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| T |
30946407 |
tttcttttaagtattcatttttaccacttagggtagcaagataaggacaacaatttaaggtcaatcatgtcaaccagttaggagtttagtgcctatgtca |
30946506 |
T |
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| Q |
117 |
tgaaatcaccaaaatttgctcagctttatgttttttcaatgcaaagaatgaaatacaaaatagaatgcaaggttacaagtatatacagtcgaca |
210 |
Q |
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| T |
30946507 |
tgacaaaaccaaaatttgctcag-ttta--catttacaataccaagaatgaaatacaaaatagaattaaaggttacaagcatatacggtcgaca |
30946597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 30931760 - 30931893
Alignment:
| Q |
68 |
aattcaaggtcaatcacgtcacccatttaggagtttactgcctatgtcatga-aatcaccaaaatttgctcagctttatgttttttcaatgcaaagaatg |
166 |
Q |
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| T |
30931760 |
aattcaaggtaaatcatgtcatgcagttaggagtttgctgcctatgtctggacaatcgccaaaatttgctttgctttacattta--caatacatagaatg |
30931857 |
T |
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| Q |
167 |
aaatacaaaatagaatgcaaggttacaagtatatac |
202 |
Q |
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| T |
30931858 |
aaatacaaaataagctgcaaggttacatgtatatac |
30931893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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