View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13863_low_17 (Length: 206)

Name: NF13863_low_17
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13863_low_17
NF13863_low_17
[»] chr7 (5 HSPs)
chr7 (85-196)||(31076692-31076803)
chr7 (85-196)||(23110039-23110150)
chr7 (85-196)||(47195107-47195218)
chr7 (85-195)||(19916031-19916141)
chr7 (118-196)||(44083374-44083452)
[»] chr2 (3 HSPs)
chr2 (83-196)||(21812726-21812839)
chr2 (85-196)||(6756777-6756888)
chr2 (90-186)||(7126187-7126283)
[»] chr4 (2 HSPs)
chr4 (85-196)||(1807668-1807779)
chr4 (85-196)||(49349190-49349301)
[»] chr1 (3 HSPs)
chr1 (83-196)||(27525544-27525657)
chr1 (83-195)||(24136082-24136194)
chr1 (85-195)||(45951486-45951587)
[»] chr6 (2 HSPs)
chr6 (85-196)||(34551333-34551444)
chr6 (85-194)||(26881177-26881288)
[»] chr8 (3 HSPs)
chr8 (86-196)||(5372892-5373002)
chr8 (85-196)||(41012095-41012204)
chr8 (85-143)||(9532057-9532115)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 31076692 - 31076803
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  31076692 gtttggtgttcaaacatgtgctccgtgaaggcaatgtatgtgcagactttttggataggttggggaggaactctactcttggagtaacaacttgggtgac 31076791  T
Q  185 acctcctgatga 196  Q
    ||||||||||||    
T  31076792 acctcctgatga 31076803  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 23110039 - 23110150
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||    
T  23110039 gtttggtgttcaaacatgtgctccgtgaaggcaatgtatgtgcagactttttggctaggttggggaggaactctactcttgaaataacaacttgagtgac 23110138  T
Q  185 acctcctgatga 196  Q
    ||||||||||||    
T  23110139 acctcctgatga 23110150  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 47195107 - 47195218
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||| |||||||||    
T  47195107 gtttggtgttcaaacatgtgctccgtgaaggcaatgtatgtgcagactttttggctagattggggaggaactctactcttggagtaacaatttgggtgac 47195206  T
Q  185 acctcctgatga 196  Q
    ||||||||||||    
T  47195207 acctcctgatga 47195218  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 19916031 - 19916141
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    |||||||||||||||||||||||  ||||| |||||||||||| || ||||||| ||||||||| || ||||||||||||| ||||||||||||||||||    
T  19916031 gtttggtgttcaaacatgtgctctatgaaggcaatgtatgtgcggattttttggctaggttgggaaggaactctactcttggagtaacaacttgggtgac 19916130  T
Q  185 acctcctgatg 195  Q
    ||||| |||||    
T  19916131 acctcttgatg 19916141  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 44083452 - 44083374
Alignment:
Q  118 atgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgacacctcctgatga 196  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  44083452 atgtatgtgcagactttttggctaggttagggaggaactctactcttggagtaacaacttgggtgacacctcctgatga 44083374  T

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Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 21812726 - 21812839
Alignment:
Q  83 aagtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtg 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| |    
T  21812726 aagtttggtgttcaaacatgtgctccgtgaagacaatgtatgtgcagactttttggctaggttggggaggaactctactcttggagtaacaacttgggcg 21812825  T
Q  183 acacctcctgatga 196  Q
    ||||||||||||||    
T  21812826 acacctcctgatga 21812839  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 6756777 - 6756888
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||| ||||    
T  6756777 gtttggtgttcaaacatgtgctccgtgaaggcaatgtatgtgcagactttttggctaggttggggagaaactctactcttggaataacaacttggatgac 6756876  T
Q  185 acctcctgatga 196  Q
    ||||||||||||    
T  6756877 acctcctgatga 6756888  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 7126187 - 7126283
Alignment:
Q  90 gtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgacac 186  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||| |||||||||||||  |||||||||||||||||||    
T  7126187 gtgttcaaacatgtgctctgtgaaggcaatgtatgtgcagactttttggctaggttggagaggaactctactcttggtgtaacaacttgggtgacac 7126283  T

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Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 1807779 - 1807668
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||    
T  1807779 gtttggtgttcaaacatgtgctccgtgaaggcaatgtatgtgcagactttttggctaggttggggaggaactctactcttggaataacaacttgggtgac 1807680  T
Q  185 acctcctgatga 196  Q
    ||||||||||||    
T  1807679 acctcctgatga 1807668  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 49349190 - 49349301
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||| ||||||||||||| | ||||||||||||||||    
T  49349190 gtttggtgttcaaacatgtgctccgtgaaggcaatgtatgtgtagattttttggctaggttggggaggaactctactcttggaataacaacttgggtgac 49349289  T
Q  185 acctcctgatga 196  Q
    ||||||||||||    
T  49349290 acctcctgatga 49349301  T

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Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 27525544 - 27525657
Alignment:
Q  83 aagtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtg 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||| ||    
T  27525544 aagtttggtgttcaaacatgtgctccgtgaaggcaatgtatgtgcagactttttggctaggttggggaggaactctactcttggaataacaacttggatg 27525643  T
Q  183 acacctcctgatga 196  Q
    ||||||||||||||    
T  27525644 acacctcctgatga 27525657  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 24136194 - 24136082
Alignment:
Q  83 aagtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtg 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| || ||||||||||||| ||||||| ||||||||    
T  24136194 aagtttggtgttcaaacatgtgctccgtgaaggcaatgtatgtgcagattttttggctaggttgggaaggaactctactcttggagtaacagcttgggtg 24136095  T
Q  183 acacctcctgatg 195  Q
    |||||||||||||    
T  24136094 acacctcctgatg 24136082  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 45951587 - 45951486
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    |||||| ||||||| ||||||||||||||| |||| |||||||||        ||||||||||| || ||||||||||||| ||||||||||||||||||    
T  45951587 gtttggcgttcaaatatgtgctccgtgaaggcaatatatgtgcag--------gttaggttggg-aggaactctactcttggagtaacaacttgggtgac 45951497  T
Q  185 acctcctgatg 195  Q
    |||||||||||    
T  45951496 acctcctgatg 45951486  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 34551444 - 34551333
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  34551444 gtttgatgttcaaacatgtgctccgtgaaggcaatgtatgtgcagactttttggctaggttggggaggaactctactcttggagtaacaacttgggtgac 34551345  T
Q  185 acctcctgatga 196  Q
    ||||||| ||||    
T  34551344 acctcctaatga 34551333  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 26881177 - 26881288
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaa-gccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtga 183  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| ||| ||||||  ||||||||| || |||||||||||||  ||||||||||||||||    
T  26881177 gtttggtgttcaaacatgtactccatgaaaggcaatgtatgtgtagattttttgactaggttgggaaggaactctactcttggtgtaacaacttgggtga 26881276  T
Q  184 c-acctcctgat 194  Q
    | ||||||||||    
T  26881277 caacctcctgat 26881288  T

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Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 5373002 - 5372892
Alignment:
Q  86 tttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgaca 185  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| |||||||| |    
T  5373002 tttggtgttcaaacatgtgctccgtgaaggtaatgtatgtgcagactttttgattaggttggggaggaactatactcttgaagtaacaatttgggtgata 5372903  T
Q  186 cctcctgatga 196  Q
    |||| ||||||    
T  5372902 cctcttgatga 5372892  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 41012095 - 41012204
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttaggttggggagtaactctactcttgaagtaacaacttgggtgac 184  Q
    ||||| |||||||||  ||||||||||||| |||||||| |||| ||||||||| |||||||||||| |||||| ||||||||||||||| |||| ||||    
T  41012095 gtttgttgttcaaac--gtgctccgtgaaggcaatgtatatgcatactttttggctaggttggggaggaactcttctcttgaagtaacaatttggatgac 41012192  T
Q  185 acctcctgatga 196  Q
    ||||||||||||    
T  41012193 acctcctgatga 41012204  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 9532115 - 9532057
Alignment:
Q  85 gtttggtgttcaaacatgtgctccgtgaagccaatgtatgtgcagactttttggttagg 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  9532115 gtttggtgttcaaacatgtgctccgtgaaggcaatgtatgtgcagactttttggctagg 9532057  T

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