View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13863_low_4 (Length: 394)
Name: NF13863_low_4
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13863_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Complemental strand, 16585324 - 16584951
Alignment:
| Q |
8 |
atgaacatgaaacaacaagaaaatattacattttccctttttatttcgtatttatcaaaaatcaatannnnnnnagaactaaacctacaaaatcatggat |
107 |
Q |
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| T |
16585324 |
atgaacatgaaacaacaagaaaatataacattttccctttttatttcgtatctatcaaaaatcaatatttttttagaactaaacctacaaaatcatggat |
16585225 |
T |
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| Q |
108 |
ctagccgtttatatatctcaaatgaaaacaacattttgaaacattttaaaaatcactaaattttatgaaatgatctaaacatgaatatttttgcataata |
207 |
Q |
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| T |
16585224 |
ctagccgtttatatatctcaaatgaaaacaacattttgaaacattttaaaaatcactaaattttatgaaatgatctaaacatgaatatttttgcataata |
16585125 |
T |
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| Q |
208 |
attcttacaacaacgatcaacaacactttataaaagcgctttacgcaacaaagccagcaaaagt-tacaccctttaatagagttctaaaattgtgacttt |
306 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
16585124 |
attcttacaacaacgatcaacaacactttaaaaaagcgcttcacgcaacaaagccagcaaaagtatacaccctttaatagggttctaaaattgtgacttt |
16585025 |
T |
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| Q |
307 |
aagaggtaaaaagaggagtaatgtctctttgaaatctgatagatcatgtgtgggtaggtgggattcgtcaatag |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16585024 |
aagaggtaaaaagaggagtaatgtctctttgaaatctgatagatcatgtgtgggtaggtggaattcgtcaatag |
16584951 |
T |
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