View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13863_low_6 (Length: 343)
Name: NF13863_low_6
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13863_low_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 5951320 - 5950978
Alignment:
| Q |
1 |
tccatttcttgtgtctgatgatgaatcatcgataacagtaagtggtatgcaggatccatttttaaactacactgaaatggataaacttcaactgaggggc |
100 |
Q |
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| T |
5951320 |
tccatttcttgtgtctgatgatgaatcatcgataacagtaagtggtatgcaggatccatttttaaactacactgaaatggataaacttcaactgaggggc |
5951221 |
T |
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| Q |
101 |
gattcagctagggcttcaatgtcaataactaggaagcgaaatcctgacggtgatgctctctttctcaaagtgcagattgttgacaagaacggtacctgat |
200 |
Q |
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| T |
5951220 |
gattcagctagggcttcaatgtcaataactaggaagcgaaatcctgacggtgatgctctctttctcaaagtgcagattgttgacaagaacggtacctgat |
5951121 |
T |
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| Q |
201 |
gttttcttattactcaaagctatatatggttcgttgtagagaaaattttgttttaaatctctatgactacatgcttcgtcctatttaaccgcagcaacgt |
300 |
Q |
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| T |
5951120 |
gttttcttattactcaaagctatatctggttcgttgtagagaaaattttgttttaaatctctatgactacatgcttcgtcctatttaaccgcagcaacgt |
5951021 |
T |
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| Q |
301 |
ttcctattcttcttttcctgcaggttctgctaggaatgtatat |
343 |
Q |
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| T |
5951020 |
ttcctattcttcttttcctgcaggttctgctaggaatgtatat |
5950978 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 18077616 - 18077537
Alignment:
| Q |
58 |
atttttaaactacactgaaatggataaacttcaactgaggggcgattcagctagggcttcaatgtcaataactaggaagc |
137 |
Q |
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| T |
18077616 |
atttttaaattacactgtgatggataaacttcaattgagaagcgattcacttaggacttcaatgtcaataattgggaagc |
18077537 |
T |
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