View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13863_low_9 (Length: 298)
Name: NF13863_low_9
Description: NF13863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13863_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 29502860 - 29503129
Alignment:
| Q |
10 |
aagaatatgattagaagaaagttagtaaaaagatagcttgagagttgagaactaaaaggacattccttatgctcccttatctttcgggtaaaatactgtt |
109 |
Q |
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| T |
29502860 |
aagaataagattagaagaaagttagtaaaaagatagcttgagagttgagaactaaaaggacattccttatgctcccttatctttcgggtaaaatactgtt |
29502959 |
T |
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| Q |
110 |
tctagcctctagatggagactttttctccaaacaaagaaaccaaaacaacaaactttctctttctcaccccaaaattcagccaaacaaatttttctctgt |
209 |
Q |
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| T |
29502960 |
tctagcctctagatggagactttttctccaaacaaagaaaccaaaacaacaaactttctctttctcaccccaaaattcagccaaacaaatttttctctgt |
29503059 |
T |
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| Q |
210 |
nnnnnnnccaataccatcgccattgcaagttaatcaaatttcatcatattcactcatagaacctaacatc |
279 |
Q |
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| T |
29503060 |
aaaaaaaccaataccatcgccattgcaagttaatcaaatttcatcatattcactcatagaacctaacatc |
29503129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 29492676 - 29492738
Alignment:
| Q |
217 |
ccaataccatcgccattgcaagttaatcaaatttcatcatattcactcatagaacctaacatc |
279 |
Q |
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|||| |||||| |||||||| ||||||||||||||| |||||||||||| |||||||||||| |
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| T |
29492676 |
ccaacaccatcaccattgcagattaatcaaatttcattatattcactcattgaacctaacatc |
29492738 |
T |
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